RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 BHLHE41Q9C0J9 482 aaPredicted RBP12.4□□□□□ -0.42
TCOF1-213ENST00000514442 SPNS1Q9H2V7 528 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 LIN7BQ9HAP6 207 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 PDE7BQ9NP56 450 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 SDHAF2Q9NX18 166 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 ZNF670-ZNF695F2Z2N8 137 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 FAAHO00519 579 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 EMC8O43402 210 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 GBX2P52951 348 aaPredicted RBP12.4□□□□□ -0.42
TCOF1-213ENST00000514442 WNT4P56705 351 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 VLDLRP98155 873 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 GPR50Q13585 617 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 SGCBQ16585 318 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 ODF4Q2M2E3 257 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 PRAMEF17Q5VTA0 474 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 METTL11BQ5VVY1 283 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 HACD4Q5VWC8 232 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 KDM4DQ6B0I6 523 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 ZFP41Q8N8Y5 198 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 ZNF680Q8NEM1 530 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 OR4K17Q8NGC6 315 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 BBS10Q8TAM1 723 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 ZDHHC1Q8WTX9 485 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 GSX2Q9BZM3 304 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 TMEM185BQ9H7F4 350 aa12.4□□□□□ -0.42
TCOF1-213ENST00000514442 RBM7Q9Y580 266 aaKnown RBP12.4□□□□□ -0.42
TCOF1-213ENST00000514442 ARPC5O15511 151 aa12.4□□□□□ -0.43
TCOF1-213ENST00000514442 TLX3O43711 291 aaPredicted RBP12.4□□□□□ -0.43
TCOF1-213ENST00000514442 RLN2P04090 185 aa12.4□□□□□ -0.43
TCOF1-213ENST00000514442 MMP12P39900 470 aa12.4□□□□□ -0.43
TCOF1-213ENST00000514442 ELOAQ14241 798 aaKnown RBP12.4□□□□□ -0.43
TCOF1-213ENST00000514442 TRAM2Q15035 370 aa12.4□□□□□ -0.43
TCOF1-213ENST00000514442 TMEM31Q5JXX7 168 aa12.4□□□□□ -0.43
TCOF1-213ENST00000514442 NXNL2Q5VZ03 156 aa12.4□□□□□ -0.43
TCOF1-213ENST00000514442 FIGNL1Q6PIW4 674 aa12.4□□□□□ -0.43
TCOF1-213ENST00000514442 ESX1Q8N693 406 aa12.4□□□□□ -0.43
TCOF1-213ENST00000514442 FAM86B1Q8N7N1 296 aa12.4□□□□□ -0.43
TCOF1-213ENST00000514442 OR2AJ1Q8NGZ0 328 aa12.4□□□□□ -0.43
TCOF1-213ENST00000514442 TCTEX1D2Q8WW35 142 aa12.4□□□□□ -0.43
TCOF1-213ENST00000514442 TRIM43Q96BQ3 446 aaPredicted RBP12.4□□□□□ -0.43
TCOF1-213ENST00000514442 ST6GAL2Q96JF0 529 aa12.4□□□□□ -0.43
TCOF1-213ENST00000514442 PFDN5Q99471 154 aa12.4□□□□□ -0.43
TCOF1-213ENST00000514442 TCF7L1Q9HCS4 588 aa12.4□□□□□ -0.43
TCOF1-213ENST00000514442 TEX10Q9NXF1 929 aaPredicted RBP12.4□□□□□ -0.43
TCOF1-213ENST00000514442 NAALAD2Q9Y3Q0 740 aa12.4□□□□□ -0.43
TCOF1-213ENST00000514442 ANHXE9PGG2 379 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 J3QLW9 94 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 LALBAP00709 142 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 ZNF19P17023 458 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 RHCEP18577 417 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 DRD5P21918 477 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 PTGER1P34995 402 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 PER3P56645 1201 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 CDK3Q00526 305 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 IRF4Q15306 451 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 TANGO2Q6ICL3 276 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 TTLL10Q6ZVT0 673 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 SERPINA11Q86U17 422 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 OR2A12Q8NGT7 310 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 THAP6Q8TBB0 222 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 RLN3Q8WXF3 142 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 PEX11GQ96HA9 241 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 LMAN1LQ9HAT1 526 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 RREB1Q92766 1687 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 ARL6IP5O75915 188 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 GJA4P35212 333 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 IRS1P35568 1242 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 EIF5AP63241 154 aaKnown RBP12.39□□□□□ -0.43
TCOF1-213ENST00000514442 Q6ZPB1 254 aaPredicted RBP12.39□□□□□ -0.43
TCOF1-213ENST00000514442 ZNF676Q8N7Q3 588 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 OR9Q2Q8NGE9 314 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 LKAAEAR1Q8TD35 194 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 FCAMRQ8WWV6 532 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 ZNF578Q96N58 590 aaPredicted RBP12.39□□□□□ -0.43
TCOF1-213ENST00000514442 ATOH8Q96SQ7 321 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 TRPV4Q9HBA0 871 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 SERINC1Q9NRX5 453 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 EIF1AXP47813 144 aaKnown RBP12.39□□□□□ -0.43
TCOF1-213ENST00000514442 SEMA3BQ13214 749 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 SFRP4Q6FHJ7 346 aaPredicted RBP12.39□□□□□ -0.43
TCOF1-213ENST00000514442 CCDC190Q86UF4 302 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 MR1Q95460 341 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 SEC61A2Q9H9S3 476 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 POM121CA8CG34 1229 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 NPC1O15118 1278 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 APEX1P27695 318 aaKnown RBP12.39□□□□□ -0.43
TCOF1-213ENST00000514442 RPS19P39019 145 aaKnown RBP12.39□□□□□ -0.43
TCOF1-213ENST00000514442 IFITM3Q01628 133 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 Q6ZSR6 202 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 ADAD1Q96M93 576 aaKnown RBP12.39□□□□□ -0.43
TCOF1-213ENST00000514442 OR5M11Q96RB7 305 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 C12orf57Q99622 126 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 TRAPPC4Q9Y296 219 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 CDH10Q9Y6N8 788 aa12.39□□□□□ -0.43
TCOF1-213ENST00000514442 SPDEFO95238 335 aa12.38□□□□□ -0.43
TCOF1-213ENST00000514442 ADAP00813 363 aa12.38□□□□□ -0.43
TCOF1-213ENST00000514442 EDNRAP25101 427 aa12.38□□□□□ -0.43
TCOF1-213ENST00000514442 MBTPS1Q14703 1052 aa12.38□□□□□ -0.43
TCOF1-213ENST00000514442 LHFPL3Q86UP9 236 aa12.38□□□□□ -0.43
TCOF1-213ENST00000514442 PAQR7Q86WK9 346 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms