RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 KLC3Q6P597 504 aa18.09■□□□□ 0.49
SQSTM1-215ENST00000514093 APOOLQ6UXV4 268 aa18.09■□□□□ 0.49
SQSTM1-215ENST00000514093 WDR75Q8IWA0 830 aaKnown RBP18.09■□□□□ 0.49
SQSTM1-215ENST00000514093 ROBO4Q8WZ75 1007 aa18.09■□□□□ 0.49
SQSTM1-215ENST00000514093 SLC9A6Q92581 669 aa18.09■□□□□ 0.49
SQSTM1-215ENST00000514093 TNFRSF13CQ96RJ3 184 aa18.09■□□□□ 0.49
SQSTM1-215ENST00000514093 TRIM2Q9C040 744 aa18.09■□□□□ 0.49
SQSTM1-215ENST00000514093 VPS11Q9H270 941 aa18.09■□□□□ 0.49
SQSTM1-215ENST00000514093 TMEM185BQ9H7F4 350 aa18.09■□□□□ 0.49
SQSTM1-215ENST00000514093 FAM120CQ9NX05 1096 aaKnown RBP18.09■□□□□ 0.49
SQSTM1-215ENST00000514093 CISD1Q9NZ45 108 aaKnown RBP18.09■□□□□ 0.49
SQSTM1-215ENST00000514093 B3GALT5Q9Y2C3 310 aa18.09■□□□□ 0.49
SQSTM1-215ENST00000514093 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP18.09■□□□□ 0.494e-19■■□□□ 14.3
SQSTM1-215ENST00000514093 CCDC189A1A4V9 331 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 ANGPTL1O95841 491 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 CHN1P15882 459 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 IL32P24001 234 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 ADH6P28332 368 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 CLK3P49761 638 aaKnown RBP18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 NUDT6P53370 316 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 CALCOCO2Q13137 446 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 DECR1Q16698 335 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 GGTA1PQ4G0N0 100 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 CYP27C1Q4G0S4 372 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 TCHHL1Q5QJ38 904 aaPredicted RBP18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 SFRP5Q5T4F7 317 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 NUFIP2Q7Z417 695 aaKnown RBP18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 CCDC25Q86WR0 208 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 FAM9CQ8IZT9 166 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 GABRG1Q8N1C3 465 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 HSD17B8Q92506 261 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 HTRA1Q92743 480 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 HDHD5Q9BXW7 423 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 TBL1XR1Q9BZK7 514 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 BRF2Q9HAW0 419 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 LRTM1Q9HBL6 345 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 NGBQ9NPG2 151 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 SLC35C2Q9NQQ7 365 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 GLRX2Q9NS18 164 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 STOML1Q9UBI4 398 aa18.08■□□□□ 0.48
SQSTM1-215ENST00000514093 A0A0J9YW62 118 aa18.07■□□□□ 0.48
SQSTM1-215ENST00000514093 CASP9P55211 416 aa18.07■□□□□ 0.48
SQSTM1-215ENST00000514093 CDH13P55290 713 aa18.07■□□□□ 0.48
SQSTM1-215ENST00000514093 C21orf58P58505 322 aa18.07■□□□□ 0.48
SQSTM1-215ENST00000514093 RAE1P78406 368 aaKnown RBP18.07■□□□□ 0.48
SQSTM1-215ENST00000514093 C17orf67Q0P5P2 114 aa18.07■□□□□ 0.48
SQSTM1-215ENST00000514093 PRSS53Q2L4Q9 553 aa18.07■□□□□ 0.48
SQSTM1-215ENST00000514093 HBMQ6B0K9 141 aa18.07■□□□□ 0.48
SQSTM1-215ENST00000514093 DNAJC14Q6Y2X3 702 aaPredicted RBP18.07■□□□□ 0.48
SQSTM1-215ENST00000514093 OR10H5Q8NGA6 315 aa18.07■□□□□ 0.48
SQSTM1-215ENST00000514093 OR2V1Q8NHB1 315 aa18.07■□□□□ 0.48
SQSTM1-215ENST00000514093 PIWIL2Q8TC59 973 aaKnown RBP18.07■□□□□ 0.48
SQSTM1-215ENST00000514093 SHARPINQ9H0F6 387 aa18.07■□□□□ 0.48
SQSTM1-215ENST00000514093 GIMAP4Q9NUV9 329 aa18.07■□□□□ 0.48
SQSTM1-215ENST00000514093 NMRK1Q9NWW6 199 aa18.07■□□□□ 0.48
SQSTM1-215ENST00000514093 VPS29Q9UBQ0 182 aa18.07■□□□□ 0.48
SQSTM1-215ENST00000514093 DMGDHQ9UI17 866 aaKnown RBP18.07■□□□□ 0.48
SQSTM1-215ENST00000514093 MCM8Q9UJA3 840 aa18.07■□□□□ 0.48
SQSTM1-215ENST00000514093 CCDC188H7C350 402 aa18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 UTS2O95399 124 aa18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 IL33O95760 270 aa18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 ADAP00813 363 aa18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 TYK2P29597 1187 aa18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 MPIP34949 423 aa18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 CSTF3Q12996 717 aaKnown RBP18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 UAP1Q16222 522 aaPredicted RBP18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 TMEM107Q6UX40 140 aa18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 SEZ6L2Q6UXD5 910 aa18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 ZC3HAV1Q7Z2W4 902 aaKnown RBP18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 CCDC91Q7Z6B0 441 aa18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 ABHD3Q8WU67 409 aa18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 OSTF1Q92882 214 aa18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 BBS4Q96RK4 519 aa18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 PAQR5Q9NXK6 330 aaPredicted RBP18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 GRHL1Q9NZI5 618 aa18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 ZNF225Q9UK10 706 aa18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 SNX6Q9UNH7 406 aa18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 SNX8Q9Y5X2 465 aa18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 CADP27708 2225 aa18.06■□□□□ 0.48
SQSTM1-215ENST00000514093 IGLV3-32A0A0A0MS00 114 aa18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 GNG14A0A1W2PPG7 69 aa18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 STX16-NPEPL1H3BU86 382 aa18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 STX16O14662 325 aa18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 ADAMDEC1O15204 470 aa18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 NDUFB5O43674 189 aa18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 PCDH7O60245 1069 aa18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 COQ9O75208 318 aa18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 JUNP05412 331 aaKnown RBP18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 FESP07332 822 aa18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 ZNF16P17020 682 aaPredicted RBP18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 ZNF17P17021 662 aa18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 STX2P32856 288 aa18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 MAGEA4P43358 317 aa18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 IRX1P78414 480 aaPredicted RBP18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 VLDLRP98155 873 aa18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 GRAMD1BQ3KR37 738 aa18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 TFAP2EQ6VUC0 442 aa18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 IL17RELQ6ZVW7 336 aa18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 DTX2Q86UW9 622 aa18.05■□□□□ 0.48
SQSTM1-215ENST00000514093 TUSC5Q8IXB3 177 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms