RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CENPVL1A0A0U1RR11 272 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 A0A0X1KG70 313 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 PLRG1O43660 514 aaKnown RBP15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 CSNK2A2P19784 350 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 PDX1P52945 283 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 NCF4Q15080 339 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 NDUFA5Q16718 116 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 DEFB134Q4QY38 66 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 TMEM35AQ53FP2 167 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 ANKRD54Q6NXT1 300 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 UBE2Q1Q7Z7E8 422 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 SLC16A11Q8NCK7 471 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 PHF21AQ96BD5 680 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 NKX2-4Q9H2Z4 354 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 UCKL1Q9NWZ5 548 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 OBP2AQ9NY56 170 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 PCDHGB2Q9Y5G2 931 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 TICRRQ7Z2Z1 1910 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 A0A1W2PRQ8 180 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 TPD52L2O43399 206 aaKnown RBP15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 PROM1O43490 865 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 RAB36O95755 333 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 GNSP15586 552 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 CMPK1P30085 196 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 SNRPGP62308 76 aaKnown RBP15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 ENPP2Q13822 863 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 EFR3AQ14156 821 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 MLC1Q15049 377 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 TRIM69Q86WT6 500 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 DNAJC5GQ8N7S2 189 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 TTLQ8NG68 377 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 RASSF5Q8WWW0 418 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 ELP4Q96EB1 424 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 ZNF624Q9P2J8 865 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 TEKT2Q9UIF3 430 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 CFAP54Q96N23 3096 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 A0A075B6Q4 140 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 A0A0G2JMP0 313 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 P2RX6O15547 441 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 PIP5K1CO60331 668 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 KLF8O95600 359 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 NR2F6P10588 404 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 HOXB2P14652 356 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 DDX5P17844 614 aaKnown RBP15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 ETV6P41212 452 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 ACTR1BP42025 376 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 ACTR1AP61163 376 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 TRA2BP62995 288 aaKnown RBP15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 TEKQ02763 1124 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 DLX2Q07687 328 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 GLYR1Q49A26 553 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 KLBQ86Z14 1044 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 NKAIN4Q8IVV8 208 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 IL17RCQ8NAC3 791 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 OR7G2Q8NG99 324 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 SAP130Q9H0E3 1048 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 C3orf14Q9HBI5 128 aa15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 MRPS7Q9Y2R9 242 aaKnown RBP15.44■□□□□ 0.06
CCDC88B-210ENST00000494566 TDRD6O60522 2096 aaKnown RBP15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 TP53BP1Q12888 1972 aaPredicted RBP15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 HMX3A6NHT5 357 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 GTPBP1O00178 669 aaKnown RBP15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 RASGRP1O95267 797 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 EGFP01133 1207 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 EIF2S1P05198 315 aaKnown RBP15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 EVI2BP34910 448 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 RFX3P48380 749 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 IDNKQ5T6J7 187 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 HSDL2Q6YN16 418 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 PRSS41Q7RTY9 318 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 C16orf62Q7Z3J2 963 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 SYT9Q86SS6 491 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 PITHD1Q9GZP4 211 aaPredicted RBP15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 A0A1W2PQF6 199 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 FAM170BA6NMN3 283 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 POLR1CO15160 346 aaPredicted RBP15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 MRPL3P09001 348 aaKnown RBP15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 CHRNB1P11230 501 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 LAMP2P13473 410 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 PVRP15151 417 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 ACSL1P33121 698 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 AGERQ15109 404 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 MTSS1LQ765P7 747 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 RRM2BQ7LG56 351 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 VWA5B2Q8N398 1253 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 PROKR2Q8NFJ6 384 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 CDS1Q92903 461 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 UPRTQ96BW1 309 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 SENP5Q96HI0 755 aaPredicted RBP15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 PRRC1Q96M27 445 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 OR2M4Q96R27 311 aa15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 ISG20L2Q9H9L3 353 aaKnown RBP15.43■□□□□ 0.06
CCDC88B-210ENST00000494566 NPIPA5A0A0B4J1W7 369 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 PRR19A6NJB7 356 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 GPR89AB7ZAQ6 455 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 NPIPA7E9PJI5 369 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 SOCS6O14544 535 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 RGS13O14921 159 aa15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 MAGEB4O15481 346 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-210ENST00000494566 CTSVO60911 334 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms