RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 SPATA5L1Q9BVQ7 753 aa9.78□□□□□ -0.84
UBR4-208ENST00000459947 SERHLQ9NQF3 203 aa9.78□□□□□ -0.84
UBR4-208ENST00000459947 WDR45Q9Y484 360 aa9.78□□□□□ -0.84
UBR4-208ENST00000459947 C7orf72A4D263 438 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 C5orf58C9J3I9 102 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 OXSR1O95747 527 aaPredicted RBP9.77□□□□□ -0.85
UBR4-208ENST00000459947 EIF1P41567 113 aaKnown RBP9.77□□□□□ -0.85
UBR4-208ENST00000459947 CA7P43166 264 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 SMSP52788 366 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 RBBP4Q09028 425 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 BCL2A1Q16548 175 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 CMPK2Q5EBM0 449 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 SPPL2CQ8IUH8 684 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 FAM26EQ8N5C1 309 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 PIK3R3Q92569 461 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 SLC35B4Q969S0 331 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 ZBTB8AQ96BR9 441 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 ROPN1LQ96C74 230 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 TEX37Q96LM6 180 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 SDF2Q99470 211 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 ANKRA2Q9H9E1 313 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 PROK2Q9HC23 129 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.77□□□□□ -0.85
UBR4-208ENST00000459947 FAM166BA8MTA8 275 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 NR2F1P10589 423 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 PTGDSP41222 190 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 SLC6A8P48029 635 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 PAIP1Q9H074 479 aaKnown RBP9.77□□□□□ -0.85
UBR4-208ENST00000459947 MTHFD2LQ9H903 347 aaPredicted RBP9.77□□□□□ -0.85
UBR4-208ENST00000459947 DNAH14Q0VDD8 3507 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 A0A0G2JPF8 293 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 HNRNPCL2B2RXH8 293 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 HNRNPCL3B7ZW38 293 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 KIAA0513O60268 411 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 HNRNPCL1O60812 293 aaKnown RBP9.77□□□□□ -0.85
UBR4-208ENST00000459947 DCTN3O75935 186 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 PDE9AO76083 593 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 ANGPTL1O95841 491 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 DBIP07108 87 aaKnown RBP9.77□□□□□ -0.85
UBR4-208ENST00000459947 HNRNPCL4P0DMR1 293 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 PEPDP12955 493 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 GNLYP22749 145 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 ZFP36L2P47974 494 aaKnown RBP9.77□□□□□ -0.85
UBR4-208ENST00000459947 GAS1P54826 345 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 KLF10Q13118 480 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 EIF2S3LQ2VIR3 472 aaKnown RBP9.77□□□□□ -0.85
UBR4-208ENST00000459947 MMEL1Q495T6 779 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 GCNT6Q5T4J0 391 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 DHDDSQ86SQ9 333 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 RNF130Q86XS8 419 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 SIMC1Q8NDZ2 872 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 RP9Q8TA86 221 aaKnown RBP9.77□□□□□ -0.85
UBR4-208ENST00000459947 XAGE5Q8WWM1 108 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 UBQLN3Q9H347 655 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 A4GALTQ9NPC4 353 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 IFT52Q9Y366 437 aa9.77□□□□□ -0.85
UBR4-208ENST00000459947 GTPBP1O00178 669 aaKnown RBP9.76□□□□□ -0.85
UBR4-208ENST00000459947 CLIC1O00299 241 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 GNB5O14775 395 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 SCO2O43819 266 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 FKBP2P26885 142 aaKnown RBP9.76□□□□□ -0.85
UBR4-208ENST00000459947 RFX3P48380 749 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 ZNF41P51814 821 aaPredicted RBP9.76□□□□□ -0.85
UBR4-208ENST00000459947 TRMT5Q32P41 509 aaKnown RBP9.76□□□□□ -0.85
UBR4-208ENST00000459947 GPAT3Q53EU6 434 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 PDSS1Q5T2R2 415 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 EIF3MQ7L2H7 374 aaKnown RBP9.76□□□□□ -0.85
UBR4-208ENST00000459947 KRT73Q86Y46 540 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 PEX5LQ8IYB4 626 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 OR9I1Q8NGQ6 314 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 B4GALNT2Q8NHY0 566 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 TMEM234Q8WY98 164 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 PIGQQ9BRB3 760 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 YIPF4Q9BSR8 244 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 INPP5KQ9BT40 448 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 EXOSC3Q9NQT5 275 aaKnown RBP9.76□□□□□ -0.85
UBR4-208ENST00000459947 SAR1AQ9NR31 198 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 ZNF232Q9UNY5 417 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 NPIPB9F8W1W9 429 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 CDC40O60508 579 aaKnown RBP eCLIP9.76□□□□□ -0.85
UBR4-208ENST00000459947 SLC19A2O60779 497 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 OR12D1P0DN82 309 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 ESRRAP11474 423 aaPredicted RBP9.76□□□□□ -0.85
UBR4-208ENST00000459947 AGAP20933 346 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 MAGEA5P43359 124 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 NFYCQ13952 458 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 FIGNL1Q6PIW4 674 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 FUNDC1Q8IVP5 155 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 OR2M3Q8NG83 312 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 OR4N2Q8NGD1 307 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 ASB5Q8WWX0 329 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 ARSGQ96EG1 525 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 LAT2Q9GZY6 243 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 PAQR5Q9NXK6 330 aaPredicted RBP9.76□□□□□ -0.85
UBR4-208ENST00000459947 ANGPT4Q9Y264 503 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 AHRRA9YTQ3 701 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 E9PLN8 166 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 TRAPPC6AO75865 159 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 DPP4P27487 766 aa9.76□□□□□ -0.85
UBR4-208ENST00000459947 ELK4P28324 431 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms