RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, human

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-208	ENST00000443046	ELOA3D	A6NLF2	546 aa	Predicted RBP	12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	TUBB	P07437	444 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	IL3	P08700	152 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	RAC1	P63000	192 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	RAE1	P78406	368 aa	Known RBP	12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	PRR5	P85299	388 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	GUCY2D	Q02846	1103 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	LOXL1	Q08397	574 aa	Predicted RBP	12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	C17orf67	Q0P5P2	114 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	ELOA3B	Q3SY89	546 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	SFRP5	Q5T4F7	317 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	LGSN	Q5TDP6	509 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	FAM219B	Q5XKK7	198 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	KLC3	Q6P597	504 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	FIGNL1	Q6PIW4	674 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	WDR75	Q8IWA0	830 aa	Known RBP	12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	PLD6	Q8N2A8	252 aa	Known RBP	12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	KBTBD8	Q8NFY9	601 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	ELOA3	Q8NG57	546 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	PIWIL2	Q8TC59	973 aa	Known RBP	12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	SELENOM	Q8WWX9	145 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	EXOSC8	Q96B26	276 aa	Known RBP	12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	HS6ST2	Q96MM7	605 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	NPAS1	Q99742	590 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	ERP44	Q9BS26	406 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	BEX2	Q9BXY8	128 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	NGB	Q9NPG2	151 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	SLC35C2	Q9NQQ7	365 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	FBXO34	Q9NWN3	711 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	NMRK1	Q9NWW6	199 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	VPS29	Q9UBQ0	182 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	TMCO1	Q9UM00	188 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	C19orf53	Q9UNZ5	99 aa	Predicted RBP	12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	B3GALT5	Q9Y2C3	310 aa		12.81	□□□□□ -0.36
HMGN1-208	ENST00000443046	UQCRHL	A0A096LP55	91 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046		A0A0J9YW62	118 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	C7orf72	A4D263	438 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	MYO1G	B0I1T2	1018 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	CXCL13	O43927	109 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	ANGPTL1	O95841	491 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	RPS17	P08708	135 aa	Known RBP	12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	HSD3B1	P14060	373 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	HSD3B2	P26439	372 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	STX2	P32856	288 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	MPI	P34949	423 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	CLK3	P49761	638 aa	Known RBP	12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	MRPS25	P82663	173 aa	Known RBP	12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	BSPH1	Q075Z2	132 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	FAP	Q12884	760 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	CALCOCO2	Q13137	446 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	TSC22D1	Q15714	1073 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	NRF1	Q16656	503 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	DECR1	Q16698	335 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	PRSS53	Q2L4Q9	553 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	PPP4R4	Q6NUP7	873 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	TFAP2E	Q6VUC0	442 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	ESPNL	Q6ZVH7	1005 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	FAM9C	Q8IZT9	166 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	ZNF483	Q8TF39	744 aa	Predicted RBP	12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	C12orf49	Q9H741	205 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	PFDN4	Q9NQP4	134 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	XPR1	Q9UBH6	696 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	LPAR3	Q9UBY5	353 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046	SNX6	Q9UNH7	406 aa		12.8	□□□□□ -0.36
HMGN1-208	ENST00000443046		A0A087WZY1	265 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	GOLGA8Q	A0A0J9YX86	632 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	GOLGA8O	A6NCC3	632 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	SHISA9	B4DS77	424 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	GOLGA8N	F8WBI6	632 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	GOLGA8R	I6L899	631 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	SSX4	O60224	188 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	COQ9	O75208	318 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	UTS2	O95399	124 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	SYNGR4	O95473	234 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	ESRRB	O95718	433 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	OTC	P00480	354 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	FES	P07332	822 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	DSCR9	P59020	149 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	ZNF155	Q12901	538 aa	Predicted RBP	12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	CSTF3	Q12996	717 aa	Known RBP	12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	CPTP	Q5TA50	214 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	GTF2IRD2B	Q6EKJ0	949 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	ALKBH2	Q6NS38	261 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	RPS27L	Q71UM5	84 aa	Known RBP	12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	GTF2IRD2	Q86UP8	949 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	OR2L13	Q8N349	312 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	OR2V1	Q8NHB1	315 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	RNF128	Q8TEB7	428 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	ROBO4	Q8WZ75	1007 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	KCNK17	Q96T54	332 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	USB1	Q9BQ65	265 aa	Known RBP	12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	LMF2	Q9BU23	707 aa	Known RBP	12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	C1QTNF3	Q9BXJ4	246 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	SHCBP1L	Q9BZQ2	653 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	AMBRA1	Q9C0C7	1298 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	DPH5	Q9H2P9	285 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	CISD1	Q9NZ45	108 aa	Known RBP	12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	VDAC3	Q9Y277	283 aa		12.79	□□□□□ -0.36
HMGN1-208	ENST00000443046	FAM234B	A2RU67	622 aa		12.78	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms