RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 NDUFA9Q16795 377 aa15.2■□□□□ 0.02
NKX3-1-201ENST00000380871 BTBD16Q32M84 506 aa15.2■□□□□ 0.02
NKX3-1-201ENST00000380871 OR4M2Q8NGB6 313 aa15.2■□□□□ 0.02
NKX3-1-201ENST00000380871 ZCCHC10Q8TBK6 192 aa15.2■□□□□ 0.02
NKX3-1-201ENST00000380871 SMAD5Q99717 465 aaKnown RBP15.2■□□□□ 0.02
NKX3-1-201ENST00000380871 ZNF649Q9BS31 505 aa15.2■□□□□ 0.02
NKX3-1-201ENST00000380871 WASH6PQ9NQA3 447 aa15.2■□□□□ 0.02
NKX3-1-201ENST00000380871 ACSS1Q9NUB1 689 aaPredicted RBP15.2■□□□□ 0.02
NKX3-1-201ENST00000380871 LIPT1Q9Y234 373 aa15.2■□□□□ 0.02
NKX3-1-201ENST00000380871 C5AR1P21730 350 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 CERS1P27544 350 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 FGF9P31371 208 aaPredicted RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 IGFALSP35858 605 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 CSTF1Q05048 431 aaKnown RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 PRDX1Q06830 199 aaKnown RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 FZD5Q13467 585 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 ZNF311Q5JNZ3 666 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 ZNF776Q68DI1 518 aaPredicted RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 ZNF57Q68EA5 555 aaPredicted RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 ZFAND1Q8TCF1 268 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 TMEM43Q9BTV4 400 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 RSPH9Q9H1X1 276 aaPredicted RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 C6orf106Q9H6K1 298 aaPredicted RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 MRPS18AQ9NVS2 196 aaKnown RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 KDM4EB2RXH2 506 aaPredicted RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 GTPBP1O00178 669 aaKnown RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 TNFRSF10AO00220 468 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 TBX19O60806 448 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 ZIC2O95409 532 aaPredicted RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 KLF8O95600 359 aaPredicted RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 IFI30P13284 250 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 KHKP50053 298 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 VASPP50552 380 aaPredicted RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 RAB28P51157 221 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 ZNF542PQ5EBM4 170 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 TMEM196Q5HYL7 178 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 FAM27D1Q5T7N8 215 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 PRR23CQ6ZRP0 262 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 ASB18Q6ZVZ8 466 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 OR4N5Q8IXE1 308 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 SIRT6Q8N6T7 355 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 BMPERQ8N8U9 685 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 KIAA1143Q96AT1 154 aaPredicted RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 SECISBP2Q96T21 854 aaKnown RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 PPIL3Q9H2H8 161 aaKnown RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 DDX31Q9H8H2 851 aaKnown RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 MED20Q9H944 212 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 SIRT4Q9Y6E7 314 aaPredicted RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 TRDV1A0A1B0GX56 115 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 A0A1W2PR48 441 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 SYNDIG1LA6NDD5 238 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 FAM25AB3EWG3 89 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 FAM25CB3EWG5 89 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 FAM25GB3EWG6 89 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 FCMRO60667 390 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 PAHP00439 452 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 THY1P04216 161 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 TFPIP10646 304 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 HOXB2P14652 356 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 ELK1P19419 428 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 HLA-DMAP28067 261 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 OMPP47874 163 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 GZMKP49863 264 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 GNG2P59768 71 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 ABATP80404 500 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 LTB4RQ15722 352 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 FAM209AQ5JX71 171 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 EOGTQ5NDL2 527 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 TMEM91Q6ZNR0 172 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 TMEFF1Q8IYR6 380 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 TCTE3Q8IZS6 198 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 DEDD2Q8WXF8 326 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 KAT2AQ92830 837 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 SLC38A2Q96QD8 506 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 TEX101Q9BY14 249 aa15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 TRIM45Q9H8W5 580 aaPredicted RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 EXOSC1Q9Y3B2 195 aaKnown RBP15.19■□□□□ 0.02
NKX3-1-201ENST00000380871 LRIT2A6NDA9 550 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 MAN2B1O00754 1011 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 RASGRP1O95267 797 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 COL9A1P20849 921 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 ATP6V1E1P36543 226 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 MC3RP41968 323 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 STXBP1P61764 594 aaKnown RBP15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 ID2Q02363 134 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 LAMTOR1Q6IAA8 161 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 SDE2Q6IQ49 451 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 ANKRD54Q6NXT1 300 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 NRMQ8IXM6 262 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 KCT2Q8NC54 265 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 BBS10Q8TAM1 723 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 TMEM255BQ8WV15 326 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 NACC2Q96BF6 587 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 PELI2Q9HAT8 420 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 CAPN10Q9HC96 672 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 ZNF860A6NHJ4 632 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 BTN3A3O00478 584 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 HCN1O60741 890 aa15.18■□□□□ 0.02
NKX3-1-201ENST00000380871 HLA-DQB1P01920 261 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 402 ms