RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 GTDC1Q4AE62 458 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 ZNF783Q6ZMS7 281 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 ANKRD13BQ86YJ7 626 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 ZNF619Q8N2I2 560 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 C22orf15Q8WYQ4 148 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 SLCO2A1Q92959 643 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 SLAMF9Q96A28 289 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 COG8Q96MW5 612 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 AIG1Q9NVV5 245 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 CBY1Q9Y3M2 126 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 SULT2B1O00204 365 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 POLR1CO15160 346 aaPredicted RBP11.93□□□□□ -0.5
SDC3-201ENST00000336798 ENSAO43768 121 aaKnown RBP11.93□□□□□ -0.5
SDC3-201ENST00000336798 SSTR4P31391 388 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 PIP5KL1Q5T9C9 394 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 LANCL3Q6ZV70 420 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 TMEM150AQ86TG1 271 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 IL17RDQ8NFM7 739 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 LILRB4Q8NHJ6 448 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 LGALS12Q96DT0 336 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 FAM86C1Q9NVL1 165 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 PLEK2Q9NYT0 353 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 PPLO60437 1756 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.93□□□□□ -0.5
SDC3-201ENST00000336798 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.93□□□□□ -0.5
SDC3-201ENST00000336798 KRBA1A5PL33 1030 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 MEIS3P2A8K0S8 358 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 KLF11O14901 512 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 STK17BO94768 372 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 APBB3O95704 486 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 PIN1Q13526 163 aaPredicted RBP11.93□□□□□ -0.5
SDC3-201ENST00000336798 MFSD6LQ8IWD5 586 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 TCTEX1D2Q8WW35 142 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 FOXJ1Q92949 421 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 C16orf70Q9BSU1 422 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 C8orf33Q9H7E9 229 aaPredicted RBP11.93□□□□□ -0.5
SDC3-201ENST00000336798 CA5BQ9Y2D0 317 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 IER3IP1Q9Y5U9 82 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 TRBV11-1A0A0K0K1C0 115 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 HSBP1L1C9JCN9 74 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 CDK2P24941 298 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 ZNF33BQ06732 778 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 EXOSC7Q15024 291 aaKnown RBP11.92□□□□□ -0.5
SDC3-201ENST00000336798 ZNF181Q2M3W8 571 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 ESX1Q8N693 406 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 FAM83FQ8NEG4 500 aaPredicted RBP11.92□□□□□ -0.5
SDC3-201ENST00000336798 DEDD2Q8WXF8 326 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 TXNL1O43396 289 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 DOK2O60496 412 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 ICMTO60725 284 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 ZNF217O75362 1048 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 AGTR1P30556 359 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 HOXD13P35453 343 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 ZNF440Q8IYI8 595 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 SLC5A8Q8N695 610 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 HORMAD2Q8N7B1 307 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 DDX1Q92499 740 aaKnown RBP11.92□□□□□ -0.5
SDC3-201ENST00000336798 ATOH1Q92858 354 aaPredicted RBP11.92□□□□□ -0.5
SDC3-201ENST00000336798 ZNF845Q96IR2 970 aaPredicted RBP11.92□□□□□ -0.5
SDC3-201ENST00000336798 ZNF317Q96PQ6 595 aaPredicted RBP11.92□□□□□ -0.5
SDC3-201ENST00000336798 HERPUD2Q9BSE4 406 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 PBDC1Q9BVG4 233 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 B3GNT3Q9Y2A9 372 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 SERPINA2P20848 420 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 HTR1EP28566 365 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 FBXW12Q6X9E4 464 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 CDS1Q92903 461 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 RTP3Q9BQQ7 232 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 ACTR10Q9NZ32 417 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 PCDHGA1Q9Y5H4 931 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 PLSCR5A0PG75 271 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 CEBPBP17676 345 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 RAB6AP20340 208 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 PRKAR1BP31321 381 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 HTR6P50406 440 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 HTD2P86397 168 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 SCML4Q8N228 414 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 OR8J1Q8NGP2 316 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 TMEM45AQ9NWC5 275 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 SLIT2O94813 1529 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 ADGRB1O14514 1584 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 SLC9B1P1A6NJY1 282 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 AP1G1O43747 822 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 CLN5O75503 358 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 HNRNPA2B1P22626 353 aaKnown RBP11.92□□□□□ -0.5
SDC3-201ENST00000336798 PTAFRP25105 342 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 DLSTP36957 453 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 ERVPABLB-1P60509 514 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 ERVK-25P63136 954 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 SH3BP2P78314 561 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 C2orf76Q3KRA6 126 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 C10orf62Q5T681 223 aaPredicted RBP11.92□□□□□ -0.5
SDC3-201ENST00000336798 METTL25Q8N6Q8 603 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 OR14K1Q8NGZ2 314 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 RSC1A1Q92681 617 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 SYT3Q9BQG1 590 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 MTHFD2LQ9H903 347 aaPredicted RBP11.92□□□□□ -0.5
SDC3-201ENST00000336798 RLIMQ9NVW2 624 aa11.92□□□□□ -0.5
SDC3-201ENST00000336798 TESQ9UGI8 421 aaKnown RBP11.92□□□□□ -0.5
SDC3-201ENST00000336798 CD207Q9UJ71 328 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms