RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 TSPAN5P62079 268 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 ZNF155Q12901 538 aaPredicted RBP12.87□□□□□ -0.35
SYNE3-201ENST00000334258 KIAA1211LQ6NV74 962 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 PRICKLE2Q7Z3G6 844 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 LINC00471Q8N535 108 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 TRMT10AQ8TBZ6 339 aaKnown RBP12.87□□□□□ -0.35
SYNE3-201ENST00000334258 PIGKQ92643 395 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 ZNF558Q96NG5 402 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 ELAC1Q9H777 363 aaKnown RBP12.87□□□□□ -0.35
SYNE3-201ENST00000334258 METTL17Q9H7H0 456 aaPredicted RBP12.87□□□□□ -0.35
SYNE3-201ENST00000334258 MAN2C1Q9NTJ4 1040 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 MRPS18AQ9NVS2 196 aaKnown RBP12.87□□□□□ -0.35
SYNE3-201ENST00000334258 PTTG3PQ9NZH4 202 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 TBX21Q9UL17 535 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 A0A1W2PRU2 124 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 SLC3A1Q07837 685 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 PUDPQ08623 228 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 TMEM115Q12893 351 aaPredicted RBP12.87□□□□□ -0.35
SYNE3-201ENST00000334258 CAMK2DQ13557 499 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 ENTPD8Q5MY95 495 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 ZNF322Q6U7Q0 402 aaPredicted RBP12.87□□□□□ -0.35
SYNE3-201ENST00000334258 OAFQ86UD1 273 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 TRAPPC5Q8IUR0 188 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 MS4A15Q8N5U1 240 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 SIPA1Q96FS4 1042 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 MS4A3Q96HJ5 214 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 SLC35G5Q96KT7 338 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 ASB6Q9NWX5 421 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 OR6C2Q9NZP2 312 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 CFAP97Q9P2B7 532 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 ACAD8Q9UKU7 415 aa12.87□□□□□ -0.35
SYNE3-201ENST00000334258 A0A1W2PRG6 482 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 GRXCR1A8MXD5 290 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 NPC1O15118 1278 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 PGRMC2O15173 223 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 CCL16O15467 120 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 B4GALT2O60909 372 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 C1orf105O95561 183 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 MT-ND4P03905 459 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 ALPPL2P10696 532 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 EN2P19622 333 aaPredicted RBP12.86□□□□□ -0.35
SYNE3-201ENST00000334258 TRIM23P36406 574 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 PYHIN1Q6K0P9 492 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 CD300LDQ6UXZ3 194 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 ANKRD33Q7Z3H0 272 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 SLC9B2Q86UD5 537 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 RPLP0P6Q8NHW5 317 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 TMEM175Q9BSA9 504 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 SYNDIG1Q9H7V2 258 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 TDP1Q9NUW8 608 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 A0A1B0GVI7 797 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 HIDE1A8MVS5 230 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 RNF13O43567 381 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 FZD7O75084 574 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 SLC2A10O95528 541 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 PEPDP12955 493 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 GABRR2P28476 465 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 RBMS1P29558 406 aaKnown RBP12.86□□□□□ -0.35
SYNE3-201ENST00000334258 GPR4P46093 362 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 SNTB2Q13425 540 aaKnown RBP12.86□□□□□ -0.35
SYNE3-201ENST00000334258 ST3GAL2Q16842 350 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 PLPP4Q5VZY2 271 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 CPOQ8IVL8 374 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 MORN4Q8NDC4 146 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 GNPDA2Q8TDQ7 276 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 KLK6Q92876 244 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 UBE2E3Q969T4 207 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 TIFAQ96CG3 184 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 PRRC1Q96M27 445 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 FUZQ9BT04 418 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 SPATA5L1Q9BVQ7 753 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 CUEDC1Q9NWM3 386 aaPredicted RBP12.86□□□□□ -0.35
SYNE3-201ENST00000334258 MRPL15Q9P015 296 aaKnown RBP12.86□□□□□ -0.35
SYNE3-201ENST00000334258 PLAGL1Q9UM63 463 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 COL6A3P12111 3177 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 HNRNPCL2B2RXH8 293 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 SOCS6O14544 535 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 BTCP35070 178 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 AKR1D1P51857 326 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 EFNB1P98172 346 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 EOGTQ5NDL2 527 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 SMARCD3Q6STE5 483 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 KIAA1324Q6UXG2 1013 aaKnown RBP12.86□□□□□ -0.35
SYNE3-201ENST00000334258 GDPD4Q6W3E5 623 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 CEACAM19Q7Z692 300 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 KIAA0907Q7Z7F0 614 aaPredicted RBP12.86□□□□□ -0.35
SYNE3-201ENST00000334258 LSRQ86X29 649 aaPredicted RBP12.86□□□□□ -0.35
SYNE3-201ENST00000334258 OR10H4Q8NGA5 316 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 HSD17B8Q92506 261 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 SCP2D1Q9UJQ7 156 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 ICKQ9UPZ9 632 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 AUP1Q9Y679 476 aa12.86□□□□□ -0.35
SYNE3-201ENST00000334258 A0A1W2PPK0 400 aa12.85□□□□□ -0.35
SYNE3-201ENST00000334258 SYNDIG1LA6NDD5 238 aa12.85□□□□□ -0.35
SYNE3-201ENST00000334258 SLC9B1P1A6NJY1 282 aa12.85□□□□□ -0.35
SYNE3-201ENST00000334258 MTNR1BP49286 362 aa12.85□□□□□ -0.35
SYNE3-201ENST00000334258 RPS7P62081 194 aaKnown RBP12.85□□□□□ -0.35
SYNE3-201ENST00000334258 SFRP4Q6FHJ7 346 aaPredicted RBP12.85□□□□□ -0.35
SYNE3-201ENST00000334258 SFXN4Q6P4A7 337 aa12.85□□□□□ -0.35
SYNE3-201ENST00000334258 TMPRSS9Q7Z410 1059 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms