RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 SLC6A17Q9H1V8 727 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 LDAHQ9H6V9 325 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 PCDHB16Q9NRJ7 776 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 MRPS18AQ9NVS2 196 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 KIF25Q9UIL4 384 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 NTNG1Q9Y2I2 539 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 MYO7AQ13402 2215 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 A0A087WUU8 490 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 L7N2F9 121 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 UGDHO60701 494 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 SREBF2Q12772 1141 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 PDE7AQ13946 482 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 OR5M10Q6IEU7 315 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 C12orf57Q99622 126 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 ISYNA1Q9NPH2 558 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 NOSIPQ9Y314 301 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 EFCAB14O75071 495 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 UQCRC2P22695 453 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 RBMS1P29558 406 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 ACVR1BP36896 505 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 BUD31P41223 144 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 PRSS55Q6UWB4 352 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 FAM198BQ6UWH4 519 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 RTN4RL1Q86UN2 441 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 UROC1Q96N76 676 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 C20orf85Q9H1P6 137 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 NANSQ9NR45 359 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 PTTG3PQ9NZH4 202 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 OR51B4Q9Y5P0 310 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 TRABD2BA6NFA1 517 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 FAM25EA8MYX2 175 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 MID1O15344 667 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 RGS9O75916 674 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 UBXN7O94888 489 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 ADRB1P08588 477 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 CYBAP13498 195 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 CTSOP43234 321 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 RAD52P43351 418 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 MAPK9P45984 424 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 MAZP56270 477 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 AP1S1P61966 158 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 C1orf94Q6P1W5 598 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 TAS1R1Q7RTX1 841 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 GANCQ8TET4 914 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 MGAT4CQ9UBM8 478 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 TRPC4Q9UBN4 977 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 RPS6KB2Q9UBS0 482 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 CASP8AP2Q9UKL3 1982 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 ZNF840PA6NDX5 716 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 A8MXK9 166 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 ZNF821O75541 412 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 OR5F1O95221 314 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 MPC1LP0DKB6 136 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 ALPPL2P10696 532 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 PTHLHP12272 177 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 AHRP35869 848 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 SP3Q02447 781 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 CEACAM19Q7Z692 300 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 MYLIPQ8WY64 445 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 EXOSC8Q96B26 276 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 ECHDC3Q96DC8 303 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 ALG14Q96F25 216 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 SLC22A12Q96S37 553 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 OR51I1Q9H343 314 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 DMRT3Q9NQL9 472 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 PIPOXQ9P0Z9 390 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 ACAD8Q9UKU7 415 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 LIPT1Q9Y234 373 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 SESN1Q9Y6P5 492 aa12.59□□□□□ -0.39
CCDC88C-201ENST00000331194 A0A1W2PRQ8 180 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 DNASE2O00115 360 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 TSPAN6O43657 245 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 DUSP11O75319 330 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 HSD3B2P26439 372 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 GPR4P46093 362 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 PRKAG1P54619 331 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 ZNF169Q14929 603 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 RTP2Q5QGT7 225 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 HECTD3Q5T447 861 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 PYHIN1Q6K0P9 492 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 SLC25A25Q6KCM7 469 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 BTN2A1Q7KYR7 527 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 CHST9Q7L1S5 443 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 KRT78Q8N1N4 520 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 TMEM99Q8N816 258 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 POGLUT1Q8NBL1 392 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 UXS1Q8NBZ7 420 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 OR11G2Q8NGC1 345 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 SOCS4Q8WXH5 440 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 ACOT12Q8WYK0 555 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 ARMC5Q96C12 935 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 HPF1Q9NWY4 346 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 ACSL5Q9ULC5 683 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 CBLCQ9ULV8 474 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 VCANP13611 3396 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 A0A0G2JK05 382 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 FAM170BA6NMN3 283 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 KDM4EB2RXH2 506 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 ARPC5O15511 151 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 HYAL3O43820 417 aaPredicted RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms