RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PHOSPHO1Q8TCT1 267 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 BRIX1Q8TDN6 353 aaKnown RBP10.87□□□□□ -0.67
VPS39-201ENST00000318006 IL17FQ96PD4 163 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 APMAPQ9HDC9 416 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 SLC2A4RGQ9NR83 387 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 ZNF701Q9NV72 531 aaPredicted RBP10.87□□□□□ -0.67
VPS39-201ENST00000318006 PRRC2BQ5JSZ5 2229 aaKnown RBP10.87□□□□□ -0.67
VPS39-201ENST00000318006 MYH9P35579 1960 aaKnown RBP10.87□□□□□ -0.67
VPS39-201ENST00000318006 A0A1B0GV50 99 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 METTL15A6NJ78 407 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 A8MUA0 341 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 GRXCR1A8MXD5 290 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 AGPAT2O15120 278 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 CACNG3O60359 315 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 ASGR2P07307 311 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 ADORA3P0DMS8 318 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 POLR2CP19387 275 aaPredicted RBP10.87□□□□□ -0.67
VPS39-201ENST00000318006 HRH2P25021 359 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 VEGFBP49765 207 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 ZNF33BQ06732 778 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 ALKAL2Q6UX46 152 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 SLC46A3Q7Z3Q1 461 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 MCEMP1Q8IX19 187 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 HCAR2Q8TDS4 363 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 ECHDC3Q96DC8 303 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 RBP7Q96R05 134 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 VRK1Q99986 396 aaPredicted RBP10.87□□□□□ -0.67
VPS39-201ENST00000318006 KLF16Q9BXK1 252 aaPredicted RBP10.87□□□□□ -0.67
VPS39-201ENST00000318006 SLC12A9Q9BXP2 914 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 ACTL8Q9H568 366 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 A0A1W2PQU0 124 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 TIMP1P01033 207 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 MT-ND4P03905 459 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 DCNP07585 359 aaKnown RBP10.87□□□□□ -0.67
VPS39-201ENST00000318006 CDK2P24941 298 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 MAGEA3P43357 314 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 NRG3P56975 720 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 DNAJC22Q8N4W6 341 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 SLC7A6Q92536 515 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 KLHDC7BQ96G42 594 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 BTNL2Q9UIR0 455 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 RASD1Q9Y272 281 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 IGLON5A6NGN9 336 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 B4GALT2O60909 372 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 AKAIN1P0CW23 69 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 BMP1P13497 986 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 ACPPP15309 386 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 FOSL1P15407 271 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 TYRP1P17643 537 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 RBMS1P29558 406 aaKnown RBP10.87□□□□□ -0.67
VPS39-201ENST00000318006 C18orf21Q32NC0 220 aaPredicted RBP10.87□□□□□ -0.67
VPS39-201ENST00000318006 SYT6Q5T7P8 510 aaPredicted RBP10.87□□□□□ -0.67
VPS39-201ENST00000318006 FRMPD2BQ6IN97 320 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 NRROSQ86YC3 692 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 LAX1Q8IWV1 398 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 ZNF454Q8N9F8 522 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 OR5D16Q8NGK9 328 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 PAQR8Q8TEZ7 354 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 SPRYD4Q8WW59 207 aaPredicted RBP10.87□□□□□ -0.67
VPS39-201ENST00000318006 ADAMTS14Q8WXS8 1223 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 APIPQ96GX9 242 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 SHDQ96IW2 340 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 WDR92Q96MX6 357 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.87□□□□□ -0.67
VPS39-201ENST00000318006 AK6Q9Y3D8 172 aaKnown RBP10.87□□□□□ -0.67
VPS39-201ENST00000318006 NAALAD2Q9Y3Q0 740 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 TCRBV5S1A1TA0A578 114 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 NTHL1P78549 312 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 RUNX3Q13761 415 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 NADSYN1Q6IA69 706 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 HMGN2P46Q86SG4 172 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 CPOQ8IVL8 374 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 PIANPQ8IYJ0 282 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 OR4K14Q8NGD5 310 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 HUS1BQ8NHY5 278 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 GIMAP1Q8WWP7 306 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 MVB12BQ9H7P6 319 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 HRASLS2Q9NWW9 162 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 SLC6A5Q9Y345 797 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 NPIPB15A6NHN6 443 aaPredicted RBP10.86□□□□□ -0.67
VPS39-201ENST00000318006 ZNF705FA8MVS1 300 aaPredicted RBP10.86□□□□□ -0.67
VPS39-201ENST00000318006 ARHGAP33O14559 1287 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 SMAD6O43541 496 aaKnown RBP10.86□□□□□ -0.67
VPS39-201ENST00000318006 ZNF705DP0CH99 300 aaPredicted RBP10.86□□□□□ -0.67
VPS39-201ENST00000318006 ZNF705BP0CI00 300 aaPredicted RBP10.86□□□□□ -0.67
VPS39-201ENST00000318006 GP1BBP13224 206 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 CD79BP40259 229 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 PBX2P40425 430 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 GPR143P51810 404 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 WDR5P61964 334 aaKnown RBP10.86□□□□□ -0.67
VPS39-201ENST00000318006 PEA15Q15121 130 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 PXDC1Q5TGL8 231 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 NXPE4Q6UWF7 544 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 UNC5DQ6UXZ4 953 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 CBLL1Q75N03 491 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 TMEM150AQ86TG1 271 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 RETREG3Q86VR2 466 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 GKN2Q86XP6 184 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 NRMQ8IXM6 262 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 SMAP2Q8WU79 429 aaPredicted RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms