RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ZNF671Q8TAW3 534 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 ZNF607Q96SK3 696 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 SEMA4CQ9C0C4 833 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 FXYD6Q9H0Q3 95 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 GPR55Q9Y2T6 319 aaPredicted RBP13.46□□□□□ -0.25
SDC1-201ENST00000254351 DYRK1BQ9Y463 629 aa13.46□□□□□ -0.25
SDC1-201ENST00000254351 PDCD5O14737 125 aa13.46□□□□□ -0.26
SDC1-201ENST00000254351 CYBAP13498 195 aa13.46□□□□□ -0.26
SDC1-201ENST00000254351 AKR1A1P14550 325 aa13.46□□□□□ -0.26
SDC1-201ENST00000254351 NPPBP16860 134 aa13.46□□□□□ -0.26
SDC1-201ENST00000254351 ANXA7P20073 488 aaKnown RBP13.46□□□□□ -0.26
SDC1-201ENST00000254351 RAD52P43351 418 aa13.46□□□□□ -0.26
SDC1-201ENST00000254351 MAGEB1P43366 347 aa13.46□□□□□ -0.26
SDC1-201ENST00000254351 TMEM220Q6QAJ8 160 aa13.46□□□□□ -0.26
SDC1-201ENST00000254351 METAP1DQ6UB28 335 aaPredicted RBP13.46□□□□□ -0.26
SDC1-201ENST00000254351 AMER3Q8N944 861 aa13.46□□□□□ -0.26
SDC1-201ENST00000254351 PLA2G15Q8NCC3 412 aa13.46□□□□□ -0.26
SDC1-201ENST00000254351 PRDM9Q9NQV7 894 aa13.46□□□□□ -0.26
SDC1-201ENST00000254351 ZCCHC3Q9NUD5 404 aaKnown RBP13.46□□□□□ -0.26
SDC1-201ENST00000254351 EXOSC1Q9Y3B2 195 aaKnown RBP13.46□□□□□ -0.26
SDC1-201ENST00000254351 AK6Q9Y3D8 172 aaKnown RBP13.46□□□□□ -0.26
SDC1-201ENST00000254351 SESN1Q9Y6P5 492 aa13.46□□□□□ -0.26
SDC1-201ENST00000254351 NPIPB8E9PQR5 432 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 ZDHHC11BP0C7U3 371 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 SPINT3P49223 89 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 CDK5Q00535 292 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 LMAN2Q12907 356 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 MINDY4Q4G0A6 757 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 ZNF322Q6U7Q0 402 aaPredicted RBP13.45□□□□□ -0.26
SDC1-201ENST00000254351 DGLUCYQ7Z3D6 616 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 ADCK2Q7Z695 626 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 OAFQ86UD1 273 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 NKAIN4Q8IVV8 208 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 CMTM8Q8IZV2 173 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 CYB561A3Q8NBI2 242 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 OR2AP1Q8NGE2 309 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 TMEM169Q96HH4 297 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 FOPNLQ96NB1 174 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 DMRTA2Q96SC8 542 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 SUV39H2Q9H5I1 410 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 BRF2Q9HAW0 419 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 KCNE3Q9Y6H6 103 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 A0A1W2PS29 197 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 C7orf66A4D0T2 115 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 ZNF821O75541 412 aaPredicted RBP13.45□□□□□ -0.26
SDC1-201ENST00000254351 UBXN7O94888 489 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 ASGR1P07306 291 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 CLUP10909 449 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 HOXD10P28358 340 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 MAPK9P45984 424 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 C18orf63Q68DL7 685 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 FUT10Q6P4F1 479 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 NRMQ8IXM6 262 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 FBXO22Q8NEZ5 403 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 OR51L1Q8NGJ5 315 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 CD99L2Q8TCZ2 262 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 SORCS1Q8WY21 1168 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 CNOT9Q92600 299 aaKnown RBP13.45□□□□□ -0.26
SDC1-201ENST00000254351 OR2M2Q96R28 347 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 C20orf85Q9H1P6 137 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 TEX10Q9NXF1 929 aaPredicted RBP13.45□□□□□ -0.26
SDC1-201ENST00000254351 NFKBIL1Q9UBC1 381 aaPredicted RBP13.45□□□□□ -0.26
SDC1-201ENST00000254351 NUBP2Q9Y5Y2 271 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 MYOFQ9NZM1 2061 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 MYO15AQ9UKN7 3530 aa13.45□□□□□ -0.26
SDC1-201ENST00000254351 MEIKINA0A087WXM9 373 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 ANXA2P2A6NMY6 339 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 EFCAB14O75071 495 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 RGS9O75916 674 aaPredicted RBP13.44□□□□□ -0.26
SDC1-201ENST00000254351 EGFP01133 1207 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 AKR1C2P52895 323 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 AKR1C1Q04828 323 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 CDKL4Q5MAI5 379 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 FAM74A1Q5RGS3 127 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 CHST9Q7L1S5 443 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 VRK2Q86Y07 508 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 TRAPPC5Q8IUR0 188 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 RASGEF1AQ8N9B8 481 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 GOT1L1Q8NHS2 421 aaPredicted RBP13.44□□□□□ -0.26
SDC1-201ENST00000254351 WNT2BQ93097 391 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 YIPF5Q969M3 257 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 MARVELD3Q96A59 401 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 C16orf58Q96GQ5 468 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 SAMD8Q96LT4 415 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 ALG8Q9BVK2 526 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 HCAR1Q9BXC0 346 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 ARL6Q9H0F7 186 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 HINT3Q9NQE9 182 aaKnown RBP13.44□□□□□ -0.26
SDC1-201ENST00000254351 SAGE1Q9NXZ1 904 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 GPR160Q9UJ42 338 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 SCP2D1Q9UJQ7 156 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 PCDHGA9Q9Y5G4 932 aaKnown RBP13.44□□□□□ -0.26
SDC1-201ENST00000254351 AUP1Q9Y679 476 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 DAPL1A0PJW8 107 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 OR6C74A6NCV1 312 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 TRABD2BA6NFA1 517 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 FAM74A7A6NL05 159 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 LINC01387J3KSC0 135 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 PI15O43692 258 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 SLC11A1P49279 550 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms