RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 HORMAD2Q8N7B1 307 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 OR5D16Q8NGK9 328 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 OR9A2Q8NGT5 310 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 FAM3CQ92520 227 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 PRRC1Q96M27 445 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 CDC6Q99741 560 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 SLC29A1Q99808 456 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 ZNF705EA8MWA4 302 aaPredicted RBP12.8□□□□□ -0.36
SF3A1-201ENST00000215793 BCAS1O75363 584 aaPredicted RBP12.8□□□□□ -0.36
SF3A1-201ENST00000215793 SC5DO75845 299 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 ZNF14P17017 642 aaPredicted RBP12.8□□□□□ -0.36
SF3A1-201ENST00000215793 DAP3P51398 398 aaKnown RBP12.8□□□□□ -0.36
SF3A1-201ENST00000215793 ZNF616Q08AN1 781 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 RAB40BQ12829 278 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 AADACL4Q5VUY2 407 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 CNTN4Q8IWV2 1026 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 CCDC71LQ8N9Z2 235 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 GALNT6Q8NCL4 622 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 DTD2Q96FN9 168 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 TPSD1Q9BZJ3 242 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 MRPL15Q9P015 296 aaKnown RBP12.8□□□□□ -0.36
SF3A1-201ENST00000215793 SLC35A3Q9Y2D2 325 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 MROH6A6NGR9 719 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 ANKRD28O15084 1053 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 GLO1Q04760 184 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 MTFR2Q6P444 385 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 OR51L1Q8NGJ5 315 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 TBC1D15Q8TC07 691 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 CIDECQ96AQ7 238 aaPredicted RBP12.8□□□□□ -0.36
SF3A1-201ENST00000215793 SYT11Q9BT88 431 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 CSNK1G1Q9HCP0 422 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 KLHL13Q9P2N7 655 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 GPR45Q9Y5Y3 372 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 EFCAB7A8K855 629 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 TIMP1P01033 207 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 T-ENOLP0DO92 83 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 CPOXP36551 454 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 SOX3P41225 446 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 ABHD17BQ5VST6 288 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 RCBTB1Q8NDN9 531 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 ACOT11Q8WXI4 607 aaPredicted RBP12.8□□□□□ -0.36
SF3A1-201ENST00000215793 OR5B12Q96R08 314 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 ACPTQ9BZG2 426 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 AGPAT4Q9NRZ5 378 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 THSD1Q9NS62 852 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 FAIMQ9NVQ4 179 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 INTS6Q9UL03 887 aaKnown RBP12.8□□□□□ -0.36
SF3A1-201ENST00000215793 CA14Q9ULX7 337 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 SRPK3Q9UPE1 567 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 IRS2Q9Y4H2 1338 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 OR8U9P0C7N5 309 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 CXCR4P61073 352 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 HES5Q5TA89 166 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 FBXO46Q6PJ61 603 aaPredicted RBP12.79□□□□□ -0.36
SF3A1-201ENST00000215793 LIPIQ6XZB0 460 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 ZNF767PQ75MW2 155 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 CYB561A3Q8NBI2 242 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 CRB3Q9BUF7 120 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 NAALAD2Q9Y3Q0 740 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 ACTL7AQ9Y615 435 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 BRINP1O60477 761 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 IL4RP24394 825 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 CA5AP35218 305 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 METTL11BQ5VVY1 283 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 FAM198BQ6UWH4 519 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 HSD11B1LQ7Z5J1 315 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 WDR53Q7Z5U6 358 aaPredicted RBP12.79□□□□□ -0.36
SF3A1-201ENST00000215793 OR2T35Q8NGX2 323 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 SLC7A13Q8TCU3 470 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 LMF1Q96S06 567 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 PHB2Q99623 299 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 SPIN2AQ99865 258 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 SPIN2BQ9BPZ2 258 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 PPIL3Q9H2H8 161 aaKnown RBP12.79□□□□□ -0.36
SF3A1-201ENST00000215793 OR52A4PA6NMU1 304 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 C17orf105B2RV13 164 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 SSX5O60225 188 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 PRAF2O60831 178 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 ZNF888P0CJ79 500 aaPredicted RBP12.79□□□□□ -0.36
SF3A1-201ENST00000215793 OTX2P32243 289 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 FAM180BQ6P0A1 224 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 PM20D2Q8IYS1 436 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 ARFGAP1Q8N6T3 406 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 OR5W2Q8NH69 310 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 TFAP2CQ92754 450 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 ZMYND19Q96E35 227 aaPredicted RBP12.79□□□□□ -0.36
SF3A1-201ENST00000215793 PDLIM5Q96HC4 596 aaKnown RBP12.79□□□□□ -0.36
SF3A1-201ENST00000215793 ZNF597Q96LX8 424 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 RBM24Q9BX46 236 aaKnown RBP12.79□□□□□ -0.36
SF3A1-201ENST00000215793 CNOT2Q9NZN8 540 aaKnown RBP12.79□□□□□ -0.36
SF3A1-201ENST00000215793 RAC2P15153 192 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 FOSL2P15408 326 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 CSNK2A1P68400 391 aaPredicted RBP12.79□□□□□ -0.36
SF3A1-201ENST00000215793 FAM217AQ8IXS0 508 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 CSNK2A3Q8NEV1 391 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 FBXO27Q8NI29 283 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 TRMT2BQ96GJ1 504 aaKnown RBP12.79□□□□□ -0.36
SF3A1-201ENST00000215793 LMF2Q9BU23 707 aaKnown RBP12.79□□□□□ -0.36
SF3A1-201ENST00000215793 CSNK1G3Q9Y6M4 447 aa12.79□□□□□ -0.36
SF3A1-201ENST00000215793 H3BMQ9 156 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms