RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 CALHM3Q86XJ0 350 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 DOLPP1Q86YN1 238 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 C9orf40Q8IXQ3 194 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 ZFP28Q8NHY6 868 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 PSMA8Q8TAA3 256 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 PNPT1Q8TCS8 783 aaKnown RBP11.63□□□□□ -0.55
PNKP-217ENST00000625216 PHF10Q8WUB8 498 aaKnown RBP11.63□□□□□ -0.55
PNKP-217ENST00000625216 BBS4Q96RK4 519 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 VKORC1Q9BQB6 163 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 CNPPD1Q9BV87 410 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 ALG2Q9H553 416 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 CXorf21Q9HAI6 301 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 TPT1P8Q9HAU6 139 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 NEUROD4Q9HD90 331 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 CHST11Q9NPF2 352 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 SACM1LQ9NTJ5 587 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 DEPPQ9NTK1 212 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 GIMAP4Q9NUV9 329 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 PSME2Q9UL46 239 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 PCDHGB4Q9UN71 923 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 ERVK-19Q9WJR5 959 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 GMEB1Q9Y692 573 aa11.63□□□□□ -0.55
PNKP-217ENST00000625216 CENPEQ02224 2701 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 RNF103-CHMP3A0A140T963 221 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 A0A1B0GTH9 108 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 FAM220BPB1ANY3 271 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 PRSS44E7EML9 344 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 HRKO00198 91 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 ZNF354AO60765 605 aaPredicted RBP11.62□□□□□ -0.55
PNKP-217ENST00000625216 DNAJA2O60884 412 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 PORP16435 677 aaPredicted RBP11.62□□□□□ -0.55
PNKP-217ENST00000625216 ATP6V1B2P21281 511 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 UQCRC2P22695 453 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 SOX18P35713 384 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 RFC3P40938 356 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 XKP51811 444 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 PLGLB1Q02325 96 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 FUT7Q11130 342 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 CCNIQ14094 377 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 HYAL4Q2M3T9 481 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 C1orf146Q5VVC0 180 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 SLC22A10Q63ZE4 541 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 SAXO2Q658L1 398 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 FGD2Q7Z6J4 655 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 IFNEQ86WN2 208 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 GALNT12Q8IXK2 581 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 CCDC116Q8IYX3 515 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 TAGAPQ8N103 731 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 LRRC25Q8N386 305 aaPredicted RBP11.62□□□□□ -0.55
PNKP-217ENST00000625216 OR9A2Q8NGT5 310 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 OR10A6Q8NH74 314 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 FAM57AQ8TBR7 257 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 PAQR8Q8TEZ7 354 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 TP53INP1Q96A56 240 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 ZNF583Q96ND8 569 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 KCTD14Q9BQ13 255 aaPredicted RBP11.62□□□□□ -0.55
PNKP-217ENST00000625216 THUMPD3Q9BV44 507 aaKnown RBP11.62□□□□□ -0.55
PNKP-217ENST00000625216 WWTR1Q9GZV5 400 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 PCDHAC1Q9H158 963 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 PIF1Q9H611 641 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 KAT8Q9H7Z6 458 aaKnown RBP11.62□□□□□ -0.55
PNKP-217ENST00000625216 ZDHHC11Q9H8X9 412 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 GPATCH2Q9NW75 528 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 CNIH4Q9P003 139 aa11.62□□□□□ -0.55
PNKP-217ENST00000625216 C2orf92A0A1B0GVN3 265 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 CDC40O60508 579 aaKnown RBP eCLIP11.61□□□□□ -0.55
PNKP-217ENST00000625216 GLSO94925 669 aaPredicted RBP11.61□□□□□ -0.55
PNKP-217ENST00000625216 NADKO95544 446 aaPredicted RBP11.61□□□□□ -0.55
PNKP-217ENST00000625216 CPMP14384 443 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 GPX2P18283 190 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 HTR1EP28566 365 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 ERFP50548 548 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 ADORA2A-AS1P86434 159 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 HSF1Q00613 529 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 EBPQ15125 230 aaKnown RBP11.61□□□□□ -0.55
PNKP-217ENST00000625216 FXNQ16595 210 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 ZNF630Q2M218 657 aaPredicted RBP11.61□□□□□ -0.55
PNKP-217ENST00000625216 SPATS1Q496A3 300 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 COX20Q5RI15 118 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 C6orf163Q5TEZ5 329 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 TMEM211Q6ICI0 200 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 MYO7BQ6PIF6 2116 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 TMEM64Q6YI46 380 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 OR7G1Q8NGA0 311 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 OR52N2Q8NGI0 321 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 ASB9Q96DX5 294 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 SPACA9Q96E40 222 aaPredicted RBP11.61□□□□□ -0.55
PNKP-217ENST00000625216 FAM120BQ96EK7 910 aaKnown RBP11.61□□□□□ -0.55
PNKP-217ENST00000625216 SH3GL1Q99961 368 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 TTTY12Q9BZ98 90 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 SH2D2AQ9NP31 389 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 EGFL7Q9UHF1 273 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 CFL2Q9Y281 166 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 SNX8Q9Y5X2 465 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 ZNF780BQ9Y6R6 833 aa11.61□□□□□ -0.55
PNKP-217ENST00000625216 TEX15Q9BXT5 2789 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 PINLYPA6NC86 204 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 ANKRD33BA6NCL7 494 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 OR14I1A6ND48 311 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 EVPLLA8MZ36 301 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms