RNA–Protein interactions for RNA: ENST00000624887.1

PCDHB11-202, Transcript of protocadherin beta 11, humanhuman

TSL 2 BASIC

Gene PCDHB11, Length 1,973 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-202ENST00000624887 PIK3R3Q92569 461 aa18.36■□□□□ 0.53
PCDHB11-202ENST00000624887 FGF11Q92914 225 aa18.36■□□□□ 0.53
PCDHB11-202ENST00000624887 SLC41A3Q96GZ6 507 aa18.36■□□□□ 0.53
PCDHB11-202ENST00000624887 TMEM80Q96HE8 168 aa18.36■□□□□ 0.53
PCDHB11-202ENST00000624887 TSSK6Q9BXA6 273 aa18.36■□□□□ 0.53
PCDHB11-202ENST00000624887 PLA2G12AQ9BZM1 189 aa18.36■□□□□ 0.53
PCDHB11-202ENST00000624887 SLIRPQ9GZT3 109 aaKnown RBP18.36■□□□□ 0.53
PCDHB11-202ENST00000624887 EGLN3Q9H6Z9 239 aa18.36■□□□□ 0.53
PCDHB11-202ENST00000624887 NTNG1Q9Y2I2 539 aa18.36■□□□□ 0.53
PCDHB11-202ENST00000624887 GON4LQ3T8J9 2241 aa18.36■□□□□ 0.53
PCDHB11-202ENST00000624887 J3QRK9 145 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 DBIP07108 87 aaKnown RBP18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 CSTF2P33240 577 aaKnown RBP eCLIP18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 CAPZBP47756 277 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 ZNF136P52737 540 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 MED22Q15528 200 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 MAPK14Q16539 360 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 MEX3DQ86XN8 651 aaKnown RBP18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 TEX47Q8TBZ9 253 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 MGLLQ99685 303 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 DCSTAMPQ9H295 470 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 CLDN25C9JDP6 229 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 KIAA0513O60268 411 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 HSMCR30P0CW71 290 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 NID1P14543 1247 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 GRK5P34947 590 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 LIMK1P53667 647 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 RHAGQ02094 409 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 UBXN2BQ14CS0 331 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 SYT14P1Q58G82 188 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 PRPF38BQ5VTL8 546 aaKnown RBP18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 RNLSQ5VYX0 342 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 SLC27A4Q6P1M0 643 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 C16orf87Q6PH81 154 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 BCDIN3DQ7Z5W3 292 aaKnown RBP18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 GPR151Q8TDV0 419 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 LMX1AQ8TE12 382 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 HOXB13Q92826 284 aaPredicted RBP18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 PMM1Q92871 262 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 TCTN2Q96GX1 697 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 FAM46AQ96IP4 442 aaKnown RBP18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 MAP3K3Q99759 626 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 ZBTB20Q9HC78 741 aaPredicted RBP18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 HMG20AQ9NP66 347 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 AKIP1Q9NQ31 210 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 FBXO8Q9NRD0 319 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 FAIMQ9NVQ4 179 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 CNIH4Q9P003 139 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 DOLKQ9UPQ8 538 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 MRPS17Q9Y2R5 130 aaKnown RBP18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 PCDHGA3Q9Y5H0 932 aa18.35■□□□□ 0.53
PCDHB11-202ENST00000624887 LILRA5A6NI73 299 aa18.34■□□□□ 0.53
PCDHB11-202ENST00000624887 NTN1O95631 604 aa18.34■□□□□ 0.53
PCDHB11-202ENST00000624887 PROS1P07225 676 aa18.34■□□□□ 0.53
PCDHB11-202ENST00000624887 FPR3P25089 353 aa18.34■□□□□ 0.53
PCDHB11-202ENST00000624887 RACK1P63244 317 aaKnown RBP18.34■□□□□ 0.53
PCDHB11-202ENST00000624887 MAP4K2Q12851 820 aa18.34■□□□□ 0.53
PCDHB11-202ENST00000624887 ZNF846Q147U1 533 aa18.34■□□□□ 0.53
PCDHB11-202ENST00000624887 C19orf48Q6RUI8 117 aa18.34■□□□□ 0.53
PCDHB11-202ENST00000624887 MBOAT2Q6ZWT7 520 aa18.34■□□□□ 0.53
PCDHB11-202ENST00000624887 VWA5B2Q8N398 1253 aa18.34■□□□□ 0.53
PCDHB11-202ENST00000624887 CADM4Q8NFZ8 388 aa18.34■□□□□ 0.53
PCDHB11-202ENST00000624887 OR8D4Q8NGM9 314 aa18.34■□□□□ 0.53
PCDHB11-202ENST00000624887 LRR1Q96L50 414 aa18.34■□□□□ 0.53
PCDHB11-202ENST00000624887 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.34■□□□□ 0.53
PCDHB11-202ENST00000624887 POLR2J2Q9GZM3 115 aaKnown RBP18.34■□□□□ 0.53
PCDHB11-202ENST00000624887 PCED1AQ9H1Q7 454 aa18.34■□□□□ 0.53
PCDHB11-202ENST00000624887 DSN1Q9H410 356 aa18.34■□□□□ 0.53
PCDHB11-202ENST00000624887 FBXO34Q9NWN3 711 aa18.34■□□□□ 0.53
PCDHB11-202ENST00000624887 A0A0A6YYC8 382 aaPredicted RBP18.33■□□□□ 0.53
PCDHB11-202ENST00000624887 I3L1I5 382 aaPredicted RBP18.33■□□□□ 0.53
PCDHB11-202ENST00000624887 CBX7O95931 251 aa18.33■□□□□ 0.53
PCDHB11-202ENST00000624887 IDUAP35475 653 aa18.33■□□□□ 0.53
PCDHB11-202ENST00000624887 STAT5AP42229 794 aa18.33■□□□□ 0.53
PCDHB11-202ENST00000624887 SKP1P63208 163 aa18.33■□□□□ 0.53
PCDHB11-202ENST00000624887 SNAPC1Q16533 368 aa18.33■□□□□ 0.53
PCDHB11-202ENST00000624887 Q6ZNX1 250 aa18.33■□□□□ 0.53
PCDHB11-202ENST00000624887 USP43Q70EL4 1123 aa18.33■□□□□ 0.53
PCDHB11-202ENST00000624887 RANBP3LQ86VV4 465 aaPredicted RBP18.33■□□□□ 0.53
PCDHB11-202ENST00000624887 OR6Q1Q8NGQ2 317 aa18.33■□□□□ 0.53
PCDHB11-202ENST00000624887 S100ZQ8WXG8 99 aa18.33■□□□□ 0.53
PCDHB11-202ENST00000624887 WDR12Q9GZL7 423 aaKnown RBP18.33■□□□□ 0.53
PCDHB11-202ENST00000624887 WNT16Q9UBV4 365 aa18.33■□□□□ 0.53
PCDHB11-202ENST00000624887 KCNE5Q9UJ90 142 aa18.33■□□□□ 0.53
PCDHB11-202ENST00000624887 ERGIC3Q9Y282 383 aa18.33■□□□□ 0.53
PCDHB11-202ENST00000624887 B3GNT3Q9Y2A9 372 aa18.33■□□□□ 0.53
PCDHB11-202ENST00000624887 LSM2Q9Y333 95 aaKnown RBP18.33■□□□□ 0.53
PCDHB11-202ENST00000624887 KLF4O43474 513 aa18.33■□□□□ 0.52
PCDHB11-202ENST00000624887 FOXS1O43638 330 aa18.33■□□□□ 0.52
PCDHB11-202ENST00000624887 OR10H2O60403 315 aa18.33■□□□□ 0.52
PCDHB11-202ENST00000624887 COQ9O75208 318 aa18.33■□□□□ 0.52
PCDHB11-202ENST00000624887 SOX30O94993 753 aa18.33■□□□□ 0.52
PCDHB11-202ENST00000624887 NKX2-2O95096 273 aa18.33■□□□□ 0.52
PCDHB11-202ENST00000624887 MED26O95402 600 aa18.33■□□□□ 0.52
PCDHB11-202ENST00000624887 RNH1P13489 461 aaKnown RBP18.33■□□□□ 0.52
PCDHB11-202ENST00000624887 MAOBP27338 520 aa18.33■□□□□ 0.52
PCDHB11-202ENST00000624887 GABRA3P34903 492 aa18.33■□□□□ 0.52
PCDHB11-202ENST00000624887 POU6F2P78424 691 aaPredicted RBP18.33■□□□□ 0.52
PCDHB11-202ENST00000624887 DGAT2L6Q6ZPD8 337 aa18.33■□□□□ 0.52
PCDHB11-202ENST00000624887 OR52R1Q8NGF1 315 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms