RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 MRPL2Q5T653 305 aaKnown RBP13.45□□□□□ -0.26
VRK3-217ENST00000599538 CASP12Q6UXS9 341 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 ZNF619Q8N2I2 560 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 SLC41A3Q96GZ6 507 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 CDX2Q99626 313 aaPredicted RBP13.45□□□□□ -0.26
VRK3-217ENST00000599538 SPRTNQ9H040 489 aaPredicted RBP13.45□□□□□ -0.26
VRK3-217ENST00000599538 TBC1D17Q9HA65 648 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 DUSP22Q9NRW4 184 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 SLC7A7Q9UM01 511 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 IFT52Q9Y366 437 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 LMO7DNF2Z398 122 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 HRO43593 1189 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 SRPX2O60687 465 aaPredicted RBP13.45□□□□□ -0.26
VRK3-217ENST00000599538 CLPXO76031 633 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 MAOAP21397 527 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 RPS4Y1P22090 263 aaKnown RBP13.45□□□□□ -0.26
VRK3-217ENST00000599538 HTR2AP28223 471 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 GPR4P46093 362 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 FNTBP49356 437 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 PSG6Q00889 435 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 LARS2Q15031 903 aaKnown RBP13.45□□□□□ -0.26
VRK3-217ENST00000599538 TMEM201Q5SNT2 666 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 KLHL35Q6PF15 583 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 WDR88Q6ZMY6 472 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 GALNT12Q8IXK2 581 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 SPEM1Q8N4L4 309 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 FGF11Q92914 225 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 SAP130Q9H0E3 1048 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 PRDM6Q9NQX0 595 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 SOHLH2Q9NX45 425 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 CLEC2DQ9UHP7 191 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 ZNF232Q9UNY5 417 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 CORINQ9Y5Q5 1042 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 PMF1-BGLAPU3KQ54 211 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 HYKKA2RU49 373 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 KIAA0513O60268 411 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 HSMCR30P0CW71 290 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 GADD45AP24522 165 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 MLLT3P42568 568 aaPredicted RBP13.44□□□□□ -0.26
VRK3-217ENST00000599538 EMDP50402 254 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 HNRNPKP61978 463 aaKnown RBP eCLIP13.44□□□□□ -0.265e-6■■■■□ 20.3
VRK3-217ENST00000599538 EFNB1P98172 346 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 ZNF155Q12901 538 aaPredicted RBP13.44□□□□□ -0.26
VRK3-217ENST00000599538 CLEC12AQ5QGZ9 265 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 PLAG1Q6DJT9 500 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 NRMQ8IXM6 262 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 OR8J1Q8NGP2 316 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 FCGR1BQ92637 280 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 LGALS12Q96DT0 336 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 MMABQ96EY8 250 aaPredicted RBP13.44□□□□□ -0.26
VRK3-217ENST00000599538 RNF167Q9H6Y7 350 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 UCK1Q9HA47 277 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 IRAK4Q9NWZ3 460 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 IL20RAQ9UHF4 553 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 SATB2Q9UPW6 733 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 RNF215Q9Y6U7 377 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 RP1P56715 2156 aa13.44□□□□□ -0.26
VRK3-217ENST00000599538 TP53BP1Q12888 1972 aaPredicted RBP13.44□□□□□ -0.26
VRK3-217ENST00000599538 EFCAB10A6NFE3 127 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 J3QRK9 145 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 HYAL3O43820 417 aaPredicted RBP13.43□□□□□ -0.26
VRK3-217ENST00000599538 BRINP1O60477 761 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 PIAS2O75928 621 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 IGKV1D-16P01601 117 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 CKMT1AP12532 417 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 RNH1P13489 461 aaKnown RBP13.43□□□□□ -0.26
VRK3-217ENST00000599538 NID1P14543 1247 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 PCYT1AP49585 367 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 ZNF91Q05481 1191 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 C14orf28Q4W4Y0 310 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 OGFOD3Q6PK18 319 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 LINC00471Q8N535 108 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 GNPDA2Q8TDQ7 276 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 ACOT11Q8WXI4 607 aaPredicted RBP13.43□□□□□ -0.26
VRK3-217ENST00000599538 ZNF285Q96NJ3 590 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 STACQ99469 402 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 PRSS27Q9BQR3 290 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 CDCA4Q9BXL8 241 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.43□□□□□ -0.26
VRK3-217ENST00000599538 NECTIN3Q9NQS3 549 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 CNOT2Q9NZN8 540 aaKnown RBP13.43□□□□□ -0.26
VRK3-217ENST00000599538 GPR52Q9Y2T5 361 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 MAU2Q9Y6X3 613 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 K7ESF4 209 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 CDC42EP2O14613 210 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 SLC22A1O15245 554 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 PRKNO60260 465 aaPredicted RBP13.43□□□□□ -0.26
VRK3-217ENST00000599538 ADAM11O75078 769 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 KCNK2O95069 426 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 NKX2-2O95096 273 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 THBS1P07996 1170 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 DBTP11182 482 aaKnown RBP13.43□□□□□ -0.26
VRK3-217ENST00000599538 FUT1P19526 365 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 OR1D5P58170 312 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 POU6F2P78424 691 aaPredicted RBP13.43□□□□□ -0.26
VRK3-217ENST00000599538 CFHR1Q03591 330 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 TSPAN31Q12999 210 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 NNATQ16517 81 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 NDUFA9Q16795 377 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 SYT14P1Q58G82 188 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms