RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 OLIG3Q7RTU3 272 aa10.16□□□□□ -0.78
VRK3-210ENST00000596121 C6orf120Q7Z4R8 191 aa10.16□□□□□ -0.78
VRK3-210ENST00000596121 YRDCQ86U90 279 aaKnown RBP10.16□□□□□ -0.78
VRK3-210ENST00000596121 MARCH3Q86UD3 253 aa10.16□□□□□ -0.78
VRK3-210ENST00000596121 OR56A1Q8NGH5 318 aa10.16□□□□□ -0.78
VRK3-210ENST00000596121 OR5D16Q8NGK9 328 aa10.16□□□□□ -0.78
VRK3-210ENST00000596121 OR4A15Q8NGL6 344 aa10.16□□□□□ -0.78
VRK3-210ENST00000596121 OR9I1Q8NGQ6 314 aa10.16□□□□□ -0.78
VRK3-210ENST00000596121 OR1J4Q8NGS1 313 aa10.16□□□□□ -0.78
VRK3-210ENST00000596121 SFXN5Q8TD22 340 aa10.16□□□□□ -0.78
VRK3-210ENST00000596121 DYDC1Q8WWB3 177 aa10.16□□□□□ -0.78
VRK3-210ENST00000596121 THOC1Q96FV9 657 aaKnown RBP10.16□□□□□ -0.78
VRK3-210ENST00000596121 MAGEB18Q96M61 343 aa10.16□□□□□ -0.78
VRK3-210ENST00000596121 KLHDC3Q9BQ90 382 aa10.16□□□□□ -0.78
VRK3-210ENST00000596121 SDR39U1Q9NRG7 319 aaPredicted RBP10.16□□□□□ -0.78
VRK3-210ENST00000596121 SLC6A13Q9NSD5 602 aa10.16□□□□□ -0.78
VRK3-210ENST00000596121 QPCTLQ9NXS2 382 aa10.16□□□□□ -0.78
VRK3-210ENST00000596121 MEMO1Q9Y316 297 aa10.16□□□□□ -0.78
VRK3-210ENST00000596121 SLC6A5Q9Y345 797 aa10.16□□□□□ -0.78
VRK3-210ENST00000596121 WIF1Q9Y5W5 379 aa10.16□□□□□ -0.78
VRK3-210ENST00000596121 NBPF19A0A087WUL8 3843 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 TTC36A6NLP5 189 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 KDM4EB2RXH2 506 aaPredicted RBP10.15□□□□□ -0.78
VRK3-210ENST00000596121 PRRG2O14669 202 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 UBDO15205 165 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 SCO2O43819 266 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 HCN1O60741 890 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 TRAPPC6AO75865 159 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 KCNH1O95259 989 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 TGDSO95455 350 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 PGRP06401 933 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 IDO1P14902 403 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 S100A3P33764 101 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 SOAT1P35610 550 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 KRT20P35900 424 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 PRIM2P49643 509 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 RNF144AP50876 292 aaPredicted RBP10.15□□□□□ -0.78
VRK3-210ENST00000596121 CLNS1AP54105 237 aaKnown RBP10.15□□□□□ -0.78
VRK3-210ENST00000596121 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.15□□□□□ -0.78
VRK3-210ENST00000596121 SPDYE7PQ495Y7 208 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 DCST1Q5T197 706 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 ZCCHC12Q6PEW1 402 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 PLCZ1Q86YW0 608 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 COX18Q8N8Q8 333 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 FADS6Q8N9I5 356 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 FAM83FQ8NEG4 500 aaPredicted RBP10.15□□□□□ -0.78
VRK3-210ENST00000596121 GOT1L1Q8NHS2 421 aaPredicted RBP10.15□□□□□ -0.78
VRK3-210ENST00000596121 RFWD2Q8NHY2 731 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 NEIL3Q8TAT5 605 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 ITLN2Q8WWU7 325 aaPredicted RBP10.15□□□□□ -0.78
VRK3-210ENST00000596121 JADE3Q92613 823 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 CCDC115Q96NT0 180 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 OR7D2Q96RA2 312 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 STACQ99469 402 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 BTBD2Q9BX70 525 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 ACTRT3Q9BYD9 372 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 PIGUQ9H490 435 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 LDAHQ9H6V9 325 aa10.15□□□□□ -0.78
VRK3-210ENST00000596121 FAM120CQ9NX05 1096 aaKnown RBP10.15□□□□□ -0.78
VRK3-210ENST00000596121 NCOA6Q14686 2063 aaPredicted RBP10.14□□□□□ -0.79
VRK3-210ENST00000596121 NPIPA5A0A0B4J1W7 369 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 RNF103-CHMP3A0A140T963 221 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 PRAMEF27A3QJZ7 478 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 NPIPA7E9PJI5 369 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 OIP5O43482 229 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 ZIC3O60481 467 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 EDF1O60869 148 aaKnown RBP10.14□□□□□ -0.79
VRK3-210ENST00000596121 SLC22A3O75751 556 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 CBR3O75828 277 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 GSNP06396 782 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 NPIPA8P0DM63 369 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 BMP7P18075 431 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 ELAVL4P26378 380 aaKnown RBP10.14□□□□□ -0.79
VRK3-210ENST00000596121 COL8A1P27658 744 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 B3GALT5-AS1P59052 145 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 POU6F2P78424 691 aaPredicted RBP10.14□□□□□ -0.79
VRK3-210ENST00000596121 CRYZQ08257 329 aaKnown RBP10.14□□□□□ -0.79
VRK3-210ENST00000596121 STX5Q13190 355 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 GSTA3Q16772 222 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 VPS26BQ4G0F5 336 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 ANXA8L1Q5VT79 327 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 SAXO2Q658L1 398 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 VASNQ6EMK4 673 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 FUNDC1Q8IVP5 155 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 OR2M3Q8NG83 312 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 DUSP19Q8WTR2 217 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 VPS33AQ96AX1 596 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 OR52E6Q96RD3 313 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 TIMP4Q99727 224 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 OR2B2Q9GZK3 357 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 DSN1Q9H410 356 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 NEUROD4Q9HD90 331 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 SLC52A3Q9NQ40 469 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 TCF7L2Q9NQB0 619 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 DUSP22Q9NRW4 184 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 GIN1Q9NXP7 522 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 ZIM2Q9NZV7 527 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 MED11Q9P086 117 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 B4GALT7Q9UBV7 327 aa10.14□□□□□ -0.79
VRK3-210ENST00000596121 BTNL2Q9UIR0 455 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms