RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 CHRNB3Q05901 458 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 TAF11Q15544 211 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 NDUFA9Q16795 377 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 GRAMD1BQ3KR37 738 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 GTDC1Q4AE62 458 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 FCRL6Q6DN72 434 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 FBXO42Q6P3S6 717 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 ZNF517Q6ZMY9 492 aaPredicted RBP9.52□□□□□ -0.89
SS18-221ENST00000582448 RNF44Q7L0R7 432 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 TMEM151BQ8IW70 566 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 SLC30A8Q8IWU4 369 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 MSRB3Q8IXL7 192 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 SLC34A3Q8N130 599 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 EID3Q8N140 333 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 ZADH2Q8N4Q0 377 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 CSNK1A1LQ8N752 337 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 CLEC1AQ8NC01 280 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 ICA1LQ8NDH6 482 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 OR1L3Q8NH93 324 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 EXOSC8Q96B26 276 aaKnown RBP9.52□□□□□ -0.89
SS18-221ENST00000582448 TM4SF19Q96DZ7 209 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 FER1L6-AS2Q96M78 137 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 LRFN5Q96NI6 719 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 MACROD1Q9BQ69 325 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 SLC35A5Q9BS91 424 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 ZNF717Q9BY31 904 aaPredicted RBP9.52□□□□□ -0.89
SS18-221ENST00000582448 KLHL31Q9H511 634 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 ACSS1Q9NUB1 689 aaPredicted RBP9.52□□□□□ -0.89
SS18-221ENST00000582448 CCM2LQ9NUG4 571 aaPredicted RBP9.52□□□□□ -0.89
SS18-221ENST00000582448 IRAK4Q9NWZ3 460 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 TAS2R7Q9NYW3 318 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 SERTAD3Q9UJW9 196 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 RPS6KA6Q9UK32 745 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 UTS2RQ9UKP6 389 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 FBXW2Q9UKT8 454 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 SAMD4AQ9UPU9 718 aaKnown RBP9.52□□□□□ -0.89
SS18-221ENST00000582448 NTNG1Q9Y2I2 539 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 C15orf41Q9Y2V0 281 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 SNX8Q9Y5X2 465 aa9.52□□□□□ -0.89
SS18-221ENST00000582448 TEP1Q99973 2627 aaKnown RBP9.51□□□□□ -0.89
SS18-221ENST00000582448 PRSS44E7EML9 344 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 H0YGG7 62 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 CASQ2O14958 399 aaPredicted RBP9.51□□□□□ -0.89
SS18-221ENST00000582448 ZNF749O43361 778 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 TMPRSS11DO60235 418 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 SRPX2O60687 465 aaPredicted RBP9.51□□□□□ -0.89
SS18-221ENST00000582448 ZG16O60844 167 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 CTSVO60911 334 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 ALPPP05187 535 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 NR2F6P10588 404 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 PVRP15151 417 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 ALOX12P18054 663 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 GPX2P18283 190 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 EFNA1P20827 205 aaPredicted RBP9.51□□□□□ -0.89
SS18-221ENST00000582448 CPN2P22792 545 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 CERS1P27544 350 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 PTPN6P29350 595 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 MPIP34949 423 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 RORAP35398 523 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 MC3RP41968 323 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 HSPA13P48723 471 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 VSX2P58304 361 aaPredicted RBP9.51□□□□□ -0.89
SS18-221ENST00000582448 ARF3P61204 181 aaPredicted RBP9.51□□□□□ -0.89
SS18-221ENST00000582448 HBA1P69905 142 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 RBBP4Q09028 425 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 FADDQ13158 208 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 VEZF1Q14119 521 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 NCF4Q15080 339 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 PRSS53Q2L4Q9 553 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 INTS11Q5TA45 600 aaKnown RBP9.51□□□□□ -0.89
SS18-221ENST00000582448 C1orf189Q5VU69 101 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 FAM198BQ6UWH4 519 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 FKBP9P1Q75LS8 142 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 VN1R4Q7Z5H5 301 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 CALHM3Q86XJ0 350 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 CCDC103Q8IW40 242 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 CARFQ8N187 725 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 GALNT16Q8N428 558 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 OR52E4Q8NGH9 312 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 OR52N2Q8NGI0 321 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 ZCCHC10Q8TBK6 192 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 ZFP90Q8TF47 636 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 CANT1Q8WVQ1 401 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 CIDECQ96AQ7 238 aaPredicted RBP9.51□□□□□ -0.89
SS18-221ENST00000582448 EME1Q96AY2 570 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 MOAP1Q96BY2 351 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 ZNF184Q99676 751 aaPredicted RBP9.51□□□□□ -0.89
SS18-221ENST00000582448 Q9H521 79 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 ZBTB20Q9HC78 741 aaPredicted RBP9.51□□□□□ -0.89
SS18-221ENST00000582448 SLC35C2Q9NQQ7 365 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 AGPAT4Q9NRZ5 378 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 SLC6A13Q9NSD5 602 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 TEX10Q9NXF1 929 aaPredicted RBP9.51□□□□□ -0.89
SS18-221ENST00000582448 THUMPD1Q9NXG2 353 aaKnown RBP9.51□□□□□ -0.89
SS18-221ENST00000582448 ITGB1BP2Q9UKP3 347 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 BAG5Q9UL15 447 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 FAF1Q9UNN5 650 aaPredicted RBP9.51□□□□□ -0.89
SS18-221ENST00000582448 EXO1Q9UQ84 846 aaKnown RBP9.51□□□□□ -0.89
SS18-221ENST00000582448 PADI2Q9Y2J8 665 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 PTRH2Q9Y3E5 179 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms