RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 PDE9AO76083 593 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 AGR2O95994 175 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 HPNP05981 417 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 UQCRC2P22695 453 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 CHI3L1P36222 383 aaPredicted RBP11.87□□□□□ -0.51
CLK3-224ENST00000568605 KHKP50053 298 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 ANXA11P50995 505 aaKnown RBP11.87□□□□□ -0.51
CLK3-224ENST00000568605 WNT3P56703 355 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 TXNL4AP83876 142 aaKnown RBP11.87□□□□□ -0.51
CLK3-224ENST00000568605 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.87□□□□□ -0.51
CLK3-224ENST00000568605 TRILQ7L0X0 811 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 CD163Q86VB7 1156 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 PLCZ1Q86YW0 608 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 FAM57AQ8TBR7 257 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 RNF138Q8WVD3 245 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 RELTQ969Z4 430 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 MARK4Q96L34 752 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 CCDC115Q96NT0 180 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 YIPF4Q9BSR8 244 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 UBQLN3Q9H347 655 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 GPATCH2Q9NW75 528 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 TINAGQ9UJW2 476 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 DKKL1Q9UK85 242 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 TRIM33Q9UPN9 1127 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 LIPGQ9Y5X9 500 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 A0A1B0GVC2 190 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 GXYLT2A0PJZ3 443 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 CBR3O75828 277 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 KCNK2O95069 426 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 ANP32DO95626 131 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 NGFRP08138 427 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 TROVE2P10155 538 aaKnown RBP eCLIP11.86□□□□□ -0.51
CLK3-224ENST00000568605 PTPN6P29350 595 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 PTGDSP41222 190 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 MRPL19P49406 292 aaKnown RBP11.86□□□□□ -0.51
CLK3-224ENST00000568605 IDH3AP50213 366 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 POLR2JP52435 117 aaKnown RBP11.86□□□□□ -0.51
CLK3-224ENST00000568605 GANABQ14697 944 aaKnown RBP11.86□□□□□ -0.51
CLK3-224ENST00000568605 C3AR1Q16581 482 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 EXOSC6Q5RKV6 272 aaKnown RBP11.86□□□□□ -0.51
CLK3-224ENST00000568605 ATAD3BQ5T9A4 648 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 WLSQ5T9L3 541 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 FNDC7Q5VTL7 733 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 DESI1Q6ICB0 168 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 FIGNL1Q6PIW4 674 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 RPTNQ6XPR3 784 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 C16orf62Q7Z3J2 963 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 ZNF527Q8NB42 609 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 OR4K17Q8NGC6 315 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 GOT1L1Q8NHS2 421 aaPredicted RBP11.86□□□□□ -0.51
CLK3-224ENST00000568605 NEIL3Q8TAT5 605 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 NUDT8Q8WV74 236 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 CDS1Q92903 461 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 C16orf58Q96GQ5 468 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 GNRHR2Q96P88 292 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 OR7D2Q96RA2 312 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 SLC35A5Q9BS91 424 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 RABEP2Q9H5N1 569 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 PTGES2Q9H7Z7 377 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 MRGBPQ9NV56 204 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 EXD2Q9NVH0 621 aa11.86□□□□□ -0.51
CLK3-224ENST00000568605 C15orf38-AP3S2A0A0A6YYH1 394 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 FAM234BA2RU67 622 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 NPIPA2E9PIF3 369 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 E9PLN8 166 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 NPIPA3F8WFD2 350 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 SCDO00767 359 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 RFXANKO14593 260 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 FADS1O60427 444 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 SCN2BO60939 215 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 WDR1O75083 606 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 UTS2O95399 124 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 LDLRP01130 860 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 CELA3AP09093 270 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 RFPL3SP0C7P2 107 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 MATN1P21941 496 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 SRD5A2P31213 254 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 ATP4BP51164 291 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 DGKQP52824 942 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 HPCAP84074 193 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 SRSF1Q07955 248 aaKnown RBP eCLIP11.85□□□□□ -0.51
CLK3-224ENST00000568605 STX5Q13190 355 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 SQLEQ14534 574 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 SF3B4Q15427 424 aaKnown RBP eCLIP11.85□□□□□ -0.512e-6■■■■□ 21.3
CLK3-224ENST00000568605 GRAMD1BQ3KR37 738 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 TIGD2Q4W5G0 525 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 DCST2Q5T1A1 773 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 C6orf120Q7Z4R8 191 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 IFNEQ86WN2 208 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 MISPQ8IVT2 679 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 OR14L1PQ8NHC6 308 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 PHF10Q8WUB8 498 aaKnown RBP11.85□□□□□ -0.51
CLK3-224ENST00000568605 NTNG2Q96CW9 530 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 OTUB1Q96FW1 271 aaPredicted RBP11.85□□□□□ -0.51
CLK3-224ENST00000568605 ITCHQ96J02 903 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 TEX37Q96LM6 180 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 VKORC1Q9BQB6 163 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 EBF4Q9BQW3 602 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 HOXD1Q9GZZ0 328 aa11.85□□□□□ -0.51
CLK3-224ENST00000568605 SLC6A15Q9H2J7 730 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms