RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 FRMD6Q96NE9 622 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 TAAR6Q96RI8 345 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 INPP5KQ9BT40 448 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 TRIM8Q9BZR9 551 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 MRGBPQ9NV56 204 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 BOKQ9UMX3 212 aaPredicted RBP15.81■□□□□ 0.12
CLN3-217ENST00000565354 CHCHD2Q9Y6H1 151 aaPredicted RBP15.81■□□□□ 0.12
CLN3-217ENST00000565354 GXYLT2A0PJZ3 443 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 ASPDHA6ND91 283 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 TSPAN2O60636 221 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 SOX30O94993 753 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 GSNP06396 782 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 LSP1P33241 339 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 RFC3P40938 356 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 DUSP5Q16690 384 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 MTFR2Q6P444 385 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 GFRALQ6UXV0 394 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 NR4A3Q92570 626 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 HGDQ93099 445 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 ZNF597Q96LX8 424 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 STACQ99469 402 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 OSBPL11Q9BXB4 747 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 PIGUQ9H490 435 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 SH2D2AQ9NP31 389 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 DEPPQ9NTK1 212 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 GPATCH2Q9NW75 528 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 TMEM45AQ9NWC5 275 aa15.8■□□□□ 0.12
CLN3-217ENST00000565354 CNOT11Q9UKZ1 510 aaKnown RBP15.8■□□□□ 0.12
CLN3-217ENST00000565354 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.8■□□□□ 0.12
CLN3-217ENST00000565354 NCOA6Q14686 2063 aaPredicted RBP15.79■□□□□ 0.12
CLN3-217ENST00000565354 TRGV8A0A0C4DH27 118 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 A0A0G2JMM0 328 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 A0A1W2PPB8 328 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 A0A1W2PRS3 328 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 GMNCA6NCL1 334 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 PRAMEF25A6NGN4 478 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 DUXAA6NLW8 204 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 KIR3DP1A8MWS1 328 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 IL33O95760 270 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 CYP4B1P13584 511 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 ATP6V1C1P21283 382 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 CDKN2CP42773 168 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 ZFP36L2P47974 494 aaKnown RBP15.79■□□□□ 0.12
CLN3-217ENST00000565354 CLK3P49761 638 aaKnown RBP15.79■□□□□ 0.12
CLN3-217ENST00000565354 ANXA11P50995 505 aaKnown RBP15.79■□□□□ 0.12
CLN3-217ENST00000565354 SEC24CP53992 1094 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 RPS26P62854 115 aaKnown RBP15.79■□□□□ 0.12
CLN3-217ENST00000565354 RCAN2Q14206 197 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 TESK1Q15569 626 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 DESI1Q6ICB0 168 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 FIGNL1Q6PIW4 674 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 BLOC1S3Q6QNY0 202 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 PACS2Q86VP3 889 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 SLC22A16Q86VW1 577 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 ZNF295-AS1Q8N0V1 137 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 ZFP62Q8NB50 900 aaPredicted RBP15.79■□□□□ 0.12
CLN3-217ENST00000565354 GOT1L1Q8NHS2 421 aaPredicted RBP15.79■□□□□ 0.12
CLN3-217ENST00000565354 CDS1Q92903 461 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 OR7D2Q96RA2 312 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 NODALQ96S42 347 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 ELAC2Q9BQ52 826 aaKnown RBP15.79■□□□□ 0.12
CLN3-217ENST00000565354 BTBD2Q9BX70 525 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 DUSP22Q9NRW4 184 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 GIN1Q9NXP7 522 aa15.79■□□□□ 0.12
CLN3-217ENST00000565354 TUBA8Q9NY65 449 aaPredicted RBP15.79■□□□□ 0.12
CLN3-217ENST00000565354 FAM166BA8MTA8 275 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 NPIPA5E9PKD4 350 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 CCL21O00585 134 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 SNX4O95219 450 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 KRT75O95678 551 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 CASP3P42574 277 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 TRPC1P48995 793 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 KHKP50053 298 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 CASP9P55211 416 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 PPIAP62937 165 aaKnown RBP15.78■□□□□ 0.12
CLN3-217ENST00000565354 ATAD3BQ5T9A4 648 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 SAXO2Q658L1 398 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 BICRALQ6AI39 1079 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 SLC30A6Q6NXT4 461 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 SLC2A7Q6PXP3 512 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 RPTNQ6XPR3 784 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 SPNS3Q6ZMD2 512 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 SPATA21Q7Z572 469 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 GALNT10Q86SR1 603 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 FUNDC1Q8IVP5 155 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 OR5D16Q8NGK9 328 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 C10orf82Q8WW14 230 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 HOXB13Q92826 284 aaPredicted RBP15.78■□□□□ 0.12
CLN3-217ENST00000565354 NEURL3Q96EH8 262 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 G6PC3Q9BUM1 346 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 ANGPTL4Q9BY76 406 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 TTTY12Q9BZ98 90 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 TSPAN10Q9H1Z9 355 aaPredicted RBP15.78■□□□□ 0.12
CLN3-217ENST00000565354 OR51I1Q9H343 314 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 IL1RL2Q9HB29 575 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 EXD2Q9NVH0 621 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 B4GALT7Q9UBV7 327 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 NPIPA1Q9UND3 350 aa15.78■□□□□ 0.12
CLN3-217ENST00000565354 EXPH5Q8NEV8 1989 aa15.77■□□□□ 0.12
CLN3-217ENST00000565354 PINLYPA6NC86 204 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms