RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 BCAS2O75934 225 aaPredicted RBP6.52□□□□□ -1.37
VPS4A-203ENST00000564399 SEMA3DO95025 777 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 NTN1O95631 604 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 OPN1LWP04000 364 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 CT45A8P0DMV1 189 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 CT45A9P0DMV2 189 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 GFAPP14136 432 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 USF1P22415 310 aaPredicted RBP6.52□□□□□ -1.37
VPS4A-203ENST00000564399 CFPP27918 469 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 EVI2BP34910 448 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 CLK3P49761 638 aaKnown RBP6.52□□□□□ -1.37
VPS4A-203ENST00000564399 CDH11P55287 796 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 RAB10P61026 200 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 PSPHP78330 225 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 IRX1P78414 480 aaPredicted RBP6.52□□□□□ -1.37
VPS4A-203ENST00000564399 LSM11P83369 360 aaKnown RBP eCLIP6.52□□□□□ -1.37
VPS4A-203ENST00000564399 DUSP2Q05923 314 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 PDIA2Q13087 525 aaKnown RBP6.52□□□□□ -1.37
VPS4A-203ENST00000564399 MORF4L2Q15014 288 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.52□□□□□ -1.37
VPS4A-203ENST00000564399 GLYR1Q49A26 553 aaPredicted RBP6.52□□□□□ -1.37
VPS4A-203ENST00000564399 CT45A2Q5DJT8 189 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 SH2D4BQ5SQS7 431 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 SFRP5Q5T4F7 317 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 TTC19Q6DKK2 380 aaPredicted RBP6.52□□□□□ -1.37
VPS4A-203ENST00000564399 GTF2IRD2BQ6EKJ0 949 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 MFSD12Q6NUT3 480 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 RAPH1Q70E73 1250 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 ISCA2Q86U28 154 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 GTF2IRD2Q86UP8 949 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 GGNQ86UU5 652 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 EXOC3L1Q86VI1 746 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 ZNF525Q8N782 197 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 FBXO36Q8NEA4 188 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 OR4N2Q8NGD1 307 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 OR10D3Q8NH80 312 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 WDR20Q8TBZ3 569 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 PIWIL2Q8TC59 973 aaKnown RBP6.52□□□□□ -1.37
VPS4A-203ENST00000564399 DUSP19Q8WTR2 217 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 KAT2AQ92830 837 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 KISS1RQ969F8 398 aaPredicted RBP6.52□□□□□ -1.37
VPS4A-203ENST00000564399 ATP6V1E2Q96A05 226 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 C1GALT1C1Q96EU7 318 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 UBXN10Q96LJ8 280 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 BTBD9Q96Q07 612 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 DDX47Q9H0S4 455 aaKnown RBP6.52□□□□□ -1.37
VPS4A-203ENST00000564399 IPPKQ9H8X2 491 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 NMRAL1Q9HBL8 299 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 PAQR5Q9NXK6 330 aaPredicted RBP6.52□□□□□ -1.37
VPS4A-203ENST00000564399 ADAM29Q9UKF5 820 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 CES1P1Q9UKY3 287 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 VDAC3Q9Y277 283 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 RNF11Q9Y3C5 154 aa6.52□□□□□ -1.37
VPS4A-203ENST00000564399 TENM1Q9UKZ4 2725 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 ANK2Q01484 3957 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 SYCE1LA8MT33 242 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 SHISA9B4DS77 424 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 ABCD4O14678 606 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 TCF21O43680 179 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 FADS1O60427 444 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 KERAO60938 352 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 GCM2O75603 506 aaPredicted RBP6.51□□□□□ -1.37
VPS4A-203ENST00000564399 ESRRBO95718 433 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 ADAP00813 363 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 AGTR1P30556 359 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 RFX3P48380 749 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 GTF2H2Q13888 395 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 GGTLC2Q14390 218 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 FASTKD3Q14CZ7 662 aaKnown RBP6.51□□□□□ -1.37
VPS4A-203ENST00000564399 STK11Q15831 433 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 PFKFB4Q16877 469 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 SGO1Q5FBB7 561 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 TMEM201Q5SNT2 666 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 PDSS1Q5T2R2 415 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 GTF2H2CQ6P1K8 395 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 NPSR1Q6W5P4 371 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 BHLHA15Q7RTS1 189 aaPredicted RBP6.51□□□□□ -1.37
VPS4A-203ENST00000564399 GALNT10Q86SR1 603 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 TBC1D1Q86TI0 1168 aaPredicted RBP6.51□□□□□ -1.37
VPS4A-203ENST00000564399 MARCH3Q86UD3 253 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 WDR75Q8IWA0 830 aaKnown RBP6.51□□□□□ -1.37
VPS4A-203ENST00000564399 CCDC116Q8IYX3 515 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 GABRG1Q8N1C3 465 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 FBXL14Q8N1E6 418 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 RFLNBQ8N5W9 214 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 BANPQ8N9N5 519 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 L3MBTL4Q8NA19 623 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 OR2W6PQ8NHA6 318 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 C10orf105Q8TEF2 133 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 TRPC4APQ8TEL6 797 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 RNF138Q8WVD3 245 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 CDKL2Q92772 493 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 PROX1Q92786 737 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 C3orf49Q96BT1 292 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 MUCL1Q96DR8 90 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 CNRIP1Q96F85 164 aaPredicted RBP6.51□□□□□ -1.37
VPS4A-203ENST00000564399 C1orf159Q96HA4 380 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 REXO5Q96IC2 774 aaKnown RBP6.51□□□□□ -1.37
VPS4A-203ENST00000564399 VSTM2LQ96N03 204 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 ATOH8Q96SQ7 321 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms