RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 FZD5Q13467 585 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 ZNF697Q5TEC3 545 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 RASSF6Q6ZTQ3 369 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 KIAA0907Q7Z7F0 614 aaPredicted RBP12.36□□□□□ -0.43
CLN3-210ENST00000563874 LIX1LQ8IVB5 337 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 PIGXQ8TBF5 258 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 PXYLP1Q8TE99 480 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 DIO2Q92813 273 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 RFKQ969G6 155 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 OSGEPL1Q9H4B0 414 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 C11orf49Q9H6J7 331 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 BCL2L10Q9HD36 194 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 HINT3Q9NQE9 182 aaKnown RBP12.36□□□□□ -0.43
CLN3-210ENST00000563874 TNFRSF10DQ9UBN6 386 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 GPR34Q9UPC5 381 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 A0A0A6YYJ9 748 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 IGKV1-8A0A0C4DH67 115 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 A0A1W2PR48 441 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 SYNDIG1LA6NDD5 238 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 ZSCAN5BA6NJL1 495 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 HIDE1A8MVS5 230 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 PRRT4C9JH25 899 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 RHOP08100 348 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 ADRB3P13945 408 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 IFNGR2P38484 337 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 OR10A3P58181 314 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 FCN2Q15485 313 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 ZNF77Q15935 545 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 FNDC3BQ53EP0 1204 aaKnown RBP12.36□□□□□ -0.43
CLN3-210ENST00000563874 ZNF322Q6U7Q0 402 aaPredicted RBP12.36□□□□□ -0.43
CLN3-210ENST00000563874 METAP1DQ6UB28 335 aaPredicted RBP12.36□□□□□ -0.43
CLN3-210ENST00000563874 MRGPREQ86SM8 312 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 SAMD14Q8IZD0 417 aaPredicted RBP12.36□□□□□ -0.43
CLN3-210ENST00000563874 SAMD12Q8N8I0 201 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 OR8H1Q8NGG4 311 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 DNAJA4Q8WW22 397 aaPredicted RBP12.36□□□□□ -0.43
CLN3-210ENST00000563874 KAT2AQ92830 837 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 ARSGQ96EG1 525 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 SAMD8Q96LT4 415 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 LRRC3BQ96PB8 259 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 PINK1Q9BXM7 581 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 BTBD1Q9H0C5 482 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 ABCG5Q9H222 651 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 SLC38A1Q9H2H9 487 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 H2AFY2Q9P0M6 372 aaPredicted RBP12.36□□□□□ -0.43
CLN3-210ENST00000563874 LRIT2A6NDA9 550 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 CDC42EP2O14613 210 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 PRNPP04156 253 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 THY1P04216 161 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 EIF4EP06730 217 aaKnown RBP12.35□□□□□ -0.43
CLN3-210ENST00000563874 POU3F3P20264 500 aaPredicted RBP12.35□□□□□ -0.43
CLN3-210ENST00000563874 TBXA2RP21731 343 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 SHC1P29353 583 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 PLBD1Q6P4A8 553 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 PLEKHM3Q6ZWE6 761 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 ESX1Q8N693 406 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 BMPERQ8N8U9 685 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 OR9A2Q8NGT5 310 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 SUN5Q8TC36 379 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 SMAP2Q8WU79 429 aaPredicted RBP12.35□□□□□ -0.43
CLN3-210ENST00000563874 DEFB118Q96PH6 123 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 OR7D2Q96RA2 312 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 MENTQ9BUN1 341 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 GTPBP2Q9BX10 602 aaKnown RBP12.35□□□□□ -0.43
CLN3-210ENST00000563874 C6orf106Q9H6K1 298 aaPredicted RBP12.35□□□□□ -0.43
CLN3-210ENST00000563874 CBLCQ9ULV8 474 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 A0A0G2JPF8 293 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 HNRNPCL2B2RXH8 293 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 HNRNPCL3B7ZW38 293 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 SGK494L7N484 410 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 SCAMP1O15126 338 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 EEF1E1O43324 174 aaKnown RBP12.35□□□□□ -0.43
CLN3-210ENST00000563874 HNRNPCL4P0DMR1 293 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 RGS8P57771 180 aaPredicted RBP12.35□□□□□ -0.43
CLN3-210ENST00000563874 TGM3Q08188 693 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 ST3GAL3Q11203 375 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 DHCR24Q15392 516 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 LTB4RQ15722 352 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 CNKSR3Q6P9H4 555 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 FAM109AQ8N4B1 249 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 HCAR2Q8TDS4 363 aa12.35□□□□□ -0.43
CLN3-210ENST00000563874 THAP7Q9BT49 309 aaPredicted RBP12.35□□□□□ -0.43
CLN3-210ENST00000563874 IMP3Q9NV31 184 aaKnown RBP12.35□□□□□ -0.43
CLN3-210ENST00000563874 KIF26AQ9ULI4 1882 aaPredicted RBP12.35□□□□□ -0.43
CLN3-210ENST00000563874 CASC3O15234 703 aaKnown RBP12.34□□□□□ -0.43
CLN3-210ENST00000563874 CHST10O43529 356 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 NOS1APO75052 506 aaPredicted RBP12.34□□□□□ -0.43
CLN3-210ENST00000563874 ADH1AP07327 375 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 SYPP08247 313 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 GCGRP47871 477 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 SLC9A5Q14940 896 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 PGGHGQ32M88 737 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 ANKRD54Q6NXT1 300 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 ENAMQ9NRM1 1142 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 NUDT15Q9NV35 164 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 MAT2BQ9NZL9 334 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 ZNF624Q9P2J8 865 aaPredicted RBP12.34□□□□□ -0.43
CLN3-210ENST00000563874 ZNF222Q9UK12 451 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 RNF13O43567 381 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 EFCAB14O75071 495 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms