RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 TIA1P31483 386 aaKnown RBP eCLIP11.52□□□□□ -0.57
SHMT2-230ENST00000557427 PIK3CBP42338 1070 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 CLCN2P51788 898 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 LIM2P55344 173 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 RAB38P57729 211 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 MTPNP58546 118 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 SLC26A5P58743 744 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 RPS13P62277 151 aaKnown RBP11.52□□□□□ -0.57
SHMT2-230ENST00000557427 RAE1P78406 368 aaKnown RBP11.52□□□□□ -0.57
SHMT2-230ENST00000557427 MED21Q13503 144 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 MEP1AQ16819 746 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 ADPRMQ3LIE5 342 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 ZNF468Q5VIY5 522 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-230ENST00000557427 GLYATQ6IB77 296 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 SLC25A25Q6KCM7 469 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 HMBOX1Q6NT76 420 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 GALNT18Q6P9A2 607 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 ZNF227Q86WZ6 799 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 TMEM132CQ8N3T6 1108 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 PACRGLQ8N7B6 248 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 TMEM178AQ8NBL3 297 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 TMEM52Q8NDY8 209 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 OR8J2Q8NGG1 315 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 GOT1L1Q8NHS2 421 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-230ENST00000557427 EME1Q96AY2 570 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 COX4I2Q96KJ9 171 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 ZNF583Q96ND8 569 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 SERINC2Q96SA4 455 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 CPPED1Q9BRF8 314 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-230ENST00000557427 SORBS1Q9BX66 1292 aaKnown RBP11.52□□□□□ -0.57
SHMT2-230ENST00000557427 GORASP2Q9H8Y8 452 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 C8orf4Q9NR00 106 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 FAM120CQ9NX05 1096 aaKnown RBP11.52□□□□□ -0.57
SHMT2-230ENST00000557427 CRIM1Q9NZV1 1036 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 ADGRE2Q9UHX3 823 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 TCRBV16S1A1N1A0A5B0 115 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 A6NNC1 897 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 GMNNO75496 209 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 TIPRLO75663 272 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 SCELO95171 688 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 ETHE1O95571 254 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 IFNA16P05015 189 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 NCK1P16333 377 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 ZNF26P17031 533 aaPredicted RBP11.51□□□□□ -0.57
SHMT2-230ENST00000557427 FASP25445 335 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 ATP5A1P25705 553 aaKnown RBP11.51□□□□□ -0.57
SHMT2-230ENST00000557427 PTPN6P29350 595 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 PPP2R1BP30154 601 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 TAS2R50P59544 299 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 LRRC74AQ0VAA2 488 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 CYP51A1Q16850 503 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 RPS19BP1Q86WX3 136 aaKnown RBP11.51□□□□□ -0.57
SHMT2-230ENST00000557427 CALHM3Q86XJ0 350 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 C1orf52Q8N6N3 182 aaKnown RBP11.51□□□□□ -0.57
SHMT2-230ENST00000557427 ACOT4Q8N9L9 421 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 SRFBP1Q8NEF9 429 aaKnown RBP11.51□□□□□ -0.57
SHMT2-230ENST00000557427 OR2T12Q8NG77 320 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 EGLN2Q96KS0 407 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 KCNC2Q96PR1 638 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 CSF3RQ99062 836 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 MAPKAP1Q9BPZ7 522 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 TBCDQ9BTW9 1192 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 THUMPD3Q9BV44 507 aaKnown RBP11.51□□□□□ -0.57
SHMT2-230ENST00000557427 EBPLQ9BY08 206 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 MS4A8Q9BY19 250 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 RPF2Q9H7B2 306 aaKnown RBP11.51□□□□□ -0.57
SHMT2-230ENST00000557427 KAT8Q9H7Z6 458 aaKnown RBP11.51□□□□□ -0.57
SHMT2-230ENST00000557427 DMRT3Q9NQL9 472 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 FBXW2Q9UKT8 454 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 DAPP1Q9UN19 280 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 EDARQ9UNE0 448 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 USP22Q9UPT9 525 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 AURKCQ9UQB9 309 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 MRPS33Q9Y291 106 aaKnown RBP11.51□□□□□ -0.57
SHMT2-230ENST00000557427 PCDHB14Q9Y5E9 798 aa11.51□□□□□ -0.57
SHMT2-230ENST00000557427 IGKV3D-11A0A0A0MRZ8 115 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 GABRR3A8MPY1 467 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 TGFBR3LH3BV60 316 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 CYR61O00622 381 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 SCAMP2O15127 329 aaKnown RBP11.5□□□□□ -0.57
SHMT2-230ENST00000557427 AKAP10O43572 662 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 NME2P1O60361 137 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 CTNSO60931 367 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 SCN2BO60939 215 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 LRATO95237 230 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 ANXA4P09525 319 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-230ENST00000557427 COX7A2P14406 83 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 HOXB6P17509 224 aaKnown RBP11.5□□□□□ -0.57
SHMT2-230ENST00000557427 TNNI3P19429 210 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 NME2P22392 152 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 SERPINB1P30740 379 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 HPCAL1P37235 193 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 RPL3P39023 403 aaKnown RBP11.5□□□□□ -0.57
SHMT2-230ENST00000557427 RFC3P40938 356 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 KIR2DL3P43628 341 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 GZMMP51124 257 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 WNT3P56703 355 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 HSD17B7P56937 341 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 NKX6-1P78426 367 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-230ENST00000557427 PLIN5Q00G26 463 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms