RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	FOLH1B	Q9HBA9	442 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	TAS2R9	Q9NYW1	312 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	STOML1	Q9UBI4	398 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	VPS29	Q9UBQ0	182 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	PCTP	Q9UKL6	214 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	TMCO1	Q9UM00	188 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	SNX6	Q9UNH7	406 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689		V9GYY5	206 aa	Predicted RBP	11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	ATR	Q13535	2644 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	HMX2	A2RU54	273 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	STX16-NPEPL1	H3BU86	382 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	STX16	O14662	325 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	FADS1	O60427	444 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	PLOD3	O60568	738 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	PLG	P00747	810 aa	Predicted RBP	11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	RBP1	P09455	135 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	CLK3	P49761	638 aa	Known RBP	11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	PLTP	P55058	493 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	CTBP2	P56545	445 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	STX5	Q13190	355 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	PPP4R4	Q6NUP7	873 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	BEND4	Q6ZU67	534 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	CCDC25	Q86WR0	208 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	C1orf52	Q8N6N3	182 aa	Known RBP	11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	DUSP19	Q8WTR2	217 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	MTBP	Q96DY7	904 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	C1GALT1C1	Q96EU7	318 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	GMPPA	Q96IJ6	420 aa	Predicted RBP	11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	FMO2	Q99518	471 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	OR10A4	Q9H209	315 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	VPS11	Q9H270	941 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	YAE1D1	Q9NRH1	226 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	GRHL1	Q9NZI5	618 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	CLEC4A	Q9UMR7	237 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	GPR52	Q9Y2T5	361 aa		11.35	□□□□□ -0.59
SHMT2-223	ENST00000556689	OVOL3	O00110	214 aa		11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	SMIM24	O75264	130 aa		11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	OTC	P00480	354 aa		11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	MPI	P34949	423 aa		11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	EIF1AX	P47813	144 aa	Known RBP	11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	SLC6A8	P48029	635 aa		11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	SERPINB8	P50452	374 aa		11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	CYP27C1	Q4G0S4	372 aa		11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	SH2D4B	Q5SQS7	431 aa		11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	ADAM5	Q6NVV9	412 aa		11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	PLD6	Q8N2A8	252 aa	Known RBP	11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	EXOSC8	Q96B26	276 aa	Known RBP	11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	RTN4R	Q9BZR6	473 aa		11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	ACTR6	Q9GZN1	396 aa		11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	GIMAP4	Q9NUV9	329 aa		11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	ABCG2	Q9UNQ0	655 aa		11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	RAI1	Q7Z5J4	1906 aa	Predicted RBP	11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	CUBN	O60494	3623 aa		11.34	□□□□□ -0.59
SHMT2-223	ENST00000556689	USF3	Q68DE3	2245 aa		11.33	□□□□□ -0.59
SHMT2-223	ENST00000556689	CHD3	Q12873	2000 aa	Known RBP	11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	ESYT3	A0FGR9	886 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	PPP6C	O00743	305 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	EIF1AY	O14602	144 aa	Known RBP	11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	CD5L	O43866	347 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	SS18L1	O75177	396 aa	Predicted RBP	11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	IL3	P08700	152 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	PSG6	Q00889	435 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	C17orf67	Q0P5P2	114 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	HEPACAM	Q14CZ8	416 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	UAP1	Q16222	522 aa	Predicted RBP	11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	DECR1	Q16698	335 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	CTU2	Q2VPK5	515 aa	Known RBP	11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	LGSN	Q5TDP6	509 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	ALKBH2	Q6NS38	261 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	LETMD1	Q6P1Q0	360 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	WDR93	Q6P2C0	686 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	RPS27L	Q71UM5	84 aa	Known RBP	11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	MARCH3	Q86UD3	253 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	GGN	Q86UU5	652 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	STK32C	Q86UX6	486 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	OR7G2	Q8NG99	324 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	RAB3IL1	Q8TBN0	382 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	GTPBP3	Q969Y2	492 aa	Known RBP	11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	TACO1	Q9BSH4	297 aa	Known RBP	11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	HDHD5	Q9BXW7	423 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	SLC35C2	Q9NQQ7	365 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	GLRX2	Q9NS18	164 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	PAQR5	Q9NXK6	330 aa	Predicted RBP	11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	FLRT3	Q9NZU0	649 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	SENP1	Q9P0U3	644 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	MCM8	Q9UJA3	840 aa		11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	MRTO4	Q9UKD2	239 aa	Known RBP	11.33	□□□□□ -0.6
SHMT2-223	ENST00000556689	HEATR5A	Q86XA9	2040 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	GNG14	A0A1W2PPG7	69 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	COQ9	O75208	318 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	SYNGR4	O95473	234 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	HSD3B1	P14060	373 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	TSPAN8	P19075	237 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	PSMB1	P20618	241 aa	Known RBP	11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	HSD3B2	P26439	372 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	ACVR1B	P36896	505 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	CDH13	P55290	713 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	ZNF155	Q12901	538 aa	Predicted RBP	11.32	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms