RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 LINC01387J3KSC0 135 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 ITM2AO43736 263 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 IL18BPO95998 194 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 GABRA3P34903 492 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 PEX19P40855 299 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 MPP2Q14168 576 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 PTGR1Q14914 329 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 TOMM20Q15388 145 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 CHI3L2Q15782 390 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 IL23RQ5VWK5 629 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 MEX3BQ6ZN04 569 aaKnown RBP14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 YRDCQ86U90 279 aaKnown RBP14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 DMRTC2Q8IXT2 367 aaPredicted RBP14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 NUP43Q8NFH3 380 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 OR2M3Q8NG83 312 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 OR14L1PQ8NHC6 308 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 OR5P2Q8WZ92 322 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 TUBGCP3Q96CW5 907 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 ZFP3Q96NJ6 502 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 STACQ99469 402 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 PRPF18Q99633 342 aaKnown RBP14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 UCK2Q9BZX2 261 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 BHLHE41Q9C0J9 482 aaPredicted RBP14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 DUSP22Q9NRW4 184 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 NOP53Q9NZM5 478 aaKnown RBP14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 CAMK2AQ9UQM7 478 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 EIF3LQ9Y262 564 aaKnown RBP14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 CSMD1Q96PZ7 3565 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 CREBBPQ92793 2442 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 OTOGQ6ZRI0 2925 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 A0A1W2PRB8 838 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 C2orf72A6NCS6 295 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 ZIC3O60481 467 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 SKAP2O75563 359 aaPredicted RBP14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 LAMP1P11279 417 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 PRIM2P49643 509 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 CLK3P49761 638 aaKnown RBP14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 LHX2P50458 406 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 DIO3P55073 304 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 CLDN8P56748 225 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 B3GALT5-AS1P59052 145 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 RCAN2Q14206 197 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 GLYR1Q49A26 553 aaPredicted RBP14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 CPTPQ5TA50 214 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 POMZP3Q6PJE2 187 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 LIX1LQ8IVB5 337 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 ZNF781Q8N8C0 355 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 OR7A2PQ8NGA2 310 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 OR4K17Q8NGC6 315 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 SFXN5Q8TD22 340 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 MOAP1Q96BY2 351 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 FAM120BQ96EK7 910 aaKnown RBP14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 SORT1Q99523 831 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 C20orf27Q9GZN8 174 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 ALKBH4Q9NXW9 302 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 PPP4R1LQ9P1A2 415 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 GIMAP2Q9UG22 337 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 KCNN3Q9UGI6 736 aa14.56□□□□□ -0.08
CCDC88C-209ENST00000554872 ANKHD1Q8IWZ3 2542 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 CSMD2Q7Z408 3487 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 GXYLT2A0PJZ3 443 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 ALG1L2C9J202 215 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 DVL2O14641 736 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 HCRTR2O43614 444 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 ERLIN1O75477 346 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 UTS2O95399 124 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 IL2RAP01589 272 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 IGKV1D-16P01601 117 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 ACP2P11117 423 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 ZNF708P17019 499 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 DPP4P27487 766 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 SLC1A6P48664 564 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 RPL14P50914 215 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 OCRLQ01968 901 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 C17orf67Q0P5P2 114 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 LSM12Q3MHD2 195 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 WDR53Q7Z5U6 358 aaPredicted RBP14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 TRIM42Q8IWZ5 723 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 SLC16A11Q8NCK7 471 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 NAXEQ8NCW5 288 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 TNIP2Q8NFZ5 429 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 OR56A1Q8NGH5 318 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 GOT1L1Q8NHS2 421 aaPredicted RBP14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 GPR151Q8TDV0 419 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 RMND5BQ96G75 393 aaPredicted RBP14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 C1orf50Q9BV19 199 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 PTGES2Q9H7Z7 377 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 EQTNQ9NQ60 294 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 FLRT3Q9NZU0 649 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 CLCF1Q9UBD9 225 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 FOXD3Q9UJU5 478 aaPredicted RBP14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 DKKL1Q9UK85 242 aa14.55□□□□□ -0.08
CCDC88C-209ENST00000554872 INTS1Q8N201 2190 aaKnown RBP14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 A0A1W2PQD3 144 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 SCO2O43819 266 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 KCNK2O95069 426 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 SNRPB2P08579 225 aaKnown RBP14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 KRT16P08779 473 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 G6PDP11413 515 aa14.54□□□□□ -0.08
CCDC88C-209ENST00000554872 CAPN3P20807 821 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms