RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 ZDHHC11BP0C7U3 371 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 GPR89BP0CG08 455 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 HNRNPCL4P0DMR1 293 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 KRT13P13646 458 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 CHMLP26374 656 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 RPA1P27694 616 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 EPHA2P29317 976 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 ATP5C1P36542 298 aaKnown RBP3.41□□□□□ -1.86
LIMA1-208ENST00000551691 ACAA2P42765 397 aaKnown RBP3.41□□□□□ -1.86
LIMA1-208ENST00000551691 PCYT1AP49585 367 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 IST1P53990 364 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 SSTP61278 116 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 MAT1AQ00266 395 aaKnown RBP3.41□□□□□ -1.86
LIMA1-208ENST00000551691 TLE4Q04727 773 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 RASGEF1BQ0VAM2 473 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 CNTN1Q12860 1018 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 OVGP1Q12889 678 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 TRAP1Q12931 704 aaKnown RBP3.41□□□□□ -1.86
LIMA1-208ENST00000551691 UGT3A2Q3SY77 523 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 MTX3Q5HYI7 312 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 AGAP6Q5VW22 663 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 MORN5Q5VZ52 161 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 SEL1L3Q68CR1 1132 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 FAM166AQ6J272 317 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 SLC39A4Q6P5W5 647 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 ARSKQ6UWY0 536 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 SIGLEC15Q6ZMC9 328 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 GCNT7Q6ZNI0 430 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 PAQR9Q6ZVX9 377 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 MARK2Q7KZI7 788 aaKnown RBP3.41□□□□□ -1.86
LIMA1-208ENST00000551691 ADAMTSL2Q86TH1 951 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 ZNF554Q86TJ5 538 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 ASPGQ86U10 573 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 KMT5CQ86Y97 462 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 TMEM139Q8IV31 216 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 PGBD5Q8N414 524 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 CSGALNACT2Q8N6G5 542 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 Q8N9P0 234 aaPredicted RBP3.41□□□□□ -1.86
LIMA1-208ENST00000551691 TMEM161BQ8NDZ6 487 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 CCDC148Q8NFR7 591 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 OR11H4Q8NGC9 324 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 OR4C15Q8NGM1 316 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 OR4A16Q8NH70 328 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 SLC20A1Q8WUM9 679 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 STARD8Q92502 1023 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 KIFAP3Q92845 792 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 ABTB1Q969K4 478 aaPredicted RBP3.41□□□□□ -1.86
LIMA1-208ENST00000551691 ZBTB9Q96C00 473 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 C14orf79Q96F83 325 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 URB1-AS1Q96HZ7 61 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 MRPL45Q9BRJ2 306 aaKnown RBP3.41□□□□□ -1.86
LIMA1-208ENST00000551691 SPRY4Q9C004 299 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 CCSER1Q9C0I3 900 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 TSPYL1Q9H0U9 437 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 SDCBP2Q9H190 292 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 CARD9Q9H257 536 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 CHMP4BQ9H444 224 aaKnown RBP3.41□□□□□ -1.86
LIMA1-208ENST00000551691 ACTL8Q9H568 366 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 TMEM231Q9H6L2 316 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 FARSBQ9NSD9 589 aaKnown RBP3.41□□□□□ -1.86
LIMA1-208ENST00000551691 FAM207AQ9NSI2 230 aaPredicted RBP3.41□□□□□ -1.86
LIMA1-208ENST00000551691 RCOR3Q9P2K3 495 aaPredicted RBP3.41□□□□□ -1.86
LIMA1-208ENST00000551691 COPS7AQ9UBW8 275 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 C19orf25Q9UFG5 118 aaPredicted RBP3.41□□□□□ -1.86
LIMA1-208ENST00000551691 TEKT2Q9UIF3 430 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 PILRAQ9UKJ1 303 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 SH3GLB1Q9Y371 365 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 ABCA4P78363 2273 aa3.41□□□□□ -1.86
LIMA1-208ENST00000551691 A0A0G2JNG1 304 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 ZCWPW2A0A1B0GU75 182 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 GOLGA6L7A0A1B0GV03 622 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 A0A1W2PPK0 400 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 CCDC162PA2VCL2 907 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 RNF212BA8MTL3 300 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 E9PI62 339 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 TMX2-CTNND1H3BSU7 103 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 SLC28A1O00337 649 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 EEF2KO00418 725 aaKnown RBP3.4□□□□□ -1.87
LIMA1-208ENST00000551691 IKBKBO14920 756 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 OGTO15294 1046 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 DIRAS3O95661 229 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 PAK4O96013 591 aaPredicted RBP3.4□□□□□ -1.87
LIMA1-208ENST00000551691 AK1P00568 194 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 IGHDP01880 384 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 TPBGLP0DKB5 382 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 RALAP11233 206 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 POLR2EP19388 210 aaKnown RBP3.4□□□□□ -1.87
LIMA1-208ENST00000551691 SCP2P22307 547 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 CD82P27701 267 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 ARRB2P32121 409 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 MAGEA4P43358 317 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 OR3A3P47888 321 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 TRPC1P48995 793 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 HTR6P50406 440 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 VAMP7P51809 220 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 CDH11P55287 796 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 OR1D5P58170 312 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 CCZ1BP86790 482 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 CCZ1P86791 482 aaPredicted RBP3.4□□□□□ -1.87
LIMA1-208ENST00000551691 TFAMQ00059 246 aaKnown RBP3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms