RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, human

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS33A-208	ENST00000543633	CNIH4	Q9P003	139 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	H2AFY2	Q9P0M6	372 aa	Predicted RBP	12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	EXTL2	Q9UBQ6	330 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	MALT1	Q9UDY8	824 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	ACSL5	Q9ULC5	683 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	LRRTM2	O43300	516 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	HR	O43593	1189 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	CXCL14	O95715	111 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	AGR2	O95994	175 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	SLC35G4	P0C7Q5	338 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	LINC00271	P0C7V0	271 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	ADH5	P11766	374 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	NDUFV2	P19404	249 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	F8A1	P23610	371 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	OR3A3	P47888	321 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	PRDX1	Q06830	199 aa	Known RBP	12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	ELAVL3	Q14576	367 aa	Known RBP	12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	DHCR24	Q15392	516 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	ZNF791	Q3KP31	576 aa	Predicted RBP	12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	C9orf64	Q5T6V5	341 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	LAMTOR1	Q6IAA8	161 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	SMARCD3	Q6STE5	483 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	PLEKHM3	Q6ZWE6	761 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	ADCK2	Q7Z695	626 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	CDH24	Q86UP0	819 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	ACBD7	Q8N6N7	88 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	ZNF366	Q8N895	744 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	SLC37A3	Q8NCC5	494 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	BRIX1	Q8TDN6	353 aa	Known RBP	12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	UCN3	Q969E3	161 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	RFT1	Q96AA3	541 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	SECISBP2	Q96T21	854 aa	Known RBP	12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	C17orf62	Q9BQA9	187 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	SLC28A3	Q9HAS3	691 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	EMC7	Q9NPA0	242 aa		12.84	□□□□□ -0.35
VPS33A-208	ENST00000543633	TCF20	Q9UGU0	1960 aa	Known RBP	12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	LOC102723532	A0A0G2JNH3	316 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	CPSF4L	A6NMK7	179 aa	Known RBP	12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	DHFR	P00374	187 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	RHO	P08100	348 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	ELK1	P19419	428 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	HIST1H1T	P22492	207 aa	Predicted RBP	12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	AHR	P35869	848 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	METAP1	P53582	386 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	TAS2R43	P59537	309 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	TGM3	Q08188	693 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	GPR176	Q14439	515 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	FAM209A	Q5JX71	171 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	SLC30A6	Q6NXT4	461 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	OAF	Q86UD1	273 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	AMER3	Q8N944	861 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	SRFBP1	Q8NEF9	429 aa	Known RBP	12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	CNRIP1	Q96F85	164 aa	Predicted RBP	12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	SARG	Q9BW04	601 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	PRR14	Q9BWN1	585 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	AICDA	Q9GZX7	198 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	CTPS2	Q9NRF8	586 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	WDR70	Q9NW82	654 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	CES1P1	Q9UKY3	287 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	NCKAP1	Q9Y2A7	1128 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	IRAK3	Q9Y616	596 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	LCMT2	O60294	686 aa	Known RBP	12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	NCR1	O76036	304 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	CRYZL1	O95825	349 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	ADH1C	P00326	375 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	ALPPL2	P10696	532 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	F3	P13726	295 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	NPR2	P20594	1047 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	ACSL1	P33121	698 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	PRKAG1	P54619	331 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	RGS8	P57771	180 aa	Predicted RBP	12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	HTRA4	P83105	476 aa	Predicted RBP	12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	MAP4K2	Q12851	820 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	FZD5	Q13467	585 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	CLEC12A	Q5QGZ9	265 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	SIGIRR	Q6IA17	410 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	SLC48A1	Q6P1K1	146 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	CXXC5	Q7LFL8	322 aa	Known RBP	12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	GLCCI1	Q86VQ1	547 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	KLB	Q86Z14	1044 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	CCDC28A	Q8IWP9	274 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	GPALPP1	Q8IXQ4	340 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	C9orf62	Q8N4C0	152 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	SCMH1	Q96GD3	660 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	AHCYL2	Q96HN2	611 aa	Known RBP	12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	GPR137	Q96N19	417 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	ACTRT3	Q9BYD9	372 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	HDHD2	Q9H0R4	259 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	OSGEPL1	Q9H4B0	414 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	RANBP3	Q9H6Z4	567 aa	Predicted RBP	12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	TRIM36	Q9NQ86	728 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	BABAM2	Q9NXR7	383 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	CXXC1	Q9P0U4	656 aa	Predicted RBP	12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	COPZ2	Q9P299	210 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	PTGFRN	Q9P2B2	879 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	SLC23A2	Q9UGH3	650 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	HEATR5B	Q9P2D3	2071 aa		12.83	□□□□□ -0.36
VPS33A-208	ENST00000543633	NOTCH4	Q99466	2003 aa		12.82	□□□□□ -0.36
VPS33A-208	ENST00000543633		A0A0X1KG70	313 aa		12.82	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms