RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 MARCH3Q86UD3 253 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 RELL1Q8IUW5 271 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 DTNBP1Q96EV8 351 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 KLHL4Q9C0H6 718 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 ZNF226Q9NYT6 803 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 TAS2R9Q9NYW1 312 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 CLEC4AQ9UMR7 237 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 MRPS18CQ9Y3D5 142 aaKnown RBP11.39□□□□□ -0.59
SKA1-205ENST00000494518 NUP214P35658 2090 aaPredicted RBP11.39□□□□□ -0.59
SKA1-205ENST00000494518 A0A087WUV0 522 aaPredicted RBP11.38□□□□□ -0.59
SKA1-205ENST00000494518 FADS1O60427 444 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 PLOD3O60568 738 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 COQ9O75208 318 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 CRYGSP22914 178 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 ECHS1P30084 290 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 MPIP34949 423 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 FOXA1P55317 472 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 MRPS22P82650 360 aaKnown RBP11.38□□□□□ -0.59
SKA1-205ENST00000494518 PON3Q15166 354 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 BCL2A1Q16548 175 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 ACKR1Q16570 336 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 YTHDF3Q7Z739 585 aaKnown RBP11.38□□□□□ -0.59
SKA1-205ENST00000494518 GALNT10Q86SR1 603 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 GBP7Q8N8V2 638 aaPredicted RBP11.38□□□□□ -0.59
SKA1-205ENST00000494518 ZNF610Q8N9Z0 462 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 DUSP19Q8WTR2 217 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 NUDT8Q8WV74 236 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 ERP27Q96DN0 273 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 ARSGQ96EG1 525 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 COX4I2Q96KJ9 171 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 ZNF180Q9UJW8 692 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 PROCRQ9UNN8 238 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 POLR3HQ9Y535 204 aaPredicted RBP11.38□□□□□ -0.59
SKA1-205ENST00000494518 COL6A5A8TX70 2615 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 ATRQ13535 2644 aa11.38□□□□□ -0.59
SKA1-205ENST00000494518 CADP27708 2225 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 UQCRHLA0A096LP55 91 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 GXYLT2A0PJZ3 443 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 MYO1GB0I1T2 1018 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 OPN1LWP04000 364 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 CRHP06850 196 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 IMPDH1P20839 514 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 ATP5F1P24539 256 aaPredicted RBP11.37□□□□□ -0.59
SKA1-205ENST00000494518 GCAP28676 217 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 EEF1A1P68104 462 aaKnown RBP11.37□□□□□ -0.59
SKA1-205ENST00000494518 LCP2Q13094 533 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 IMPG1Q17R60 797 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 EEF1A1P5Q5VTE0 462 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 SAMD14Q8IZD0 417 aaPredicted RBP11.37□□□□□ -0.59
SKA1-205ENST00000494518 CCNYL1Q8N7R7 359 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 PIGTQ969N2 578 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 KCTD12Q96CX2 325 aaKnown RBP11.37□□□□□ -0.59
SKA1-205ENST00000494518 C1GALT1C1Q96EU7 318 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 C16orf45Q96MC5 204 aaPredicted RBP11.37□□□□□ -0.59
SKA1-205ENST00000494518 GLIPR2Q9H4G4 154 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 MID1IP1Q9NPA3 183 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 EQTNQ9NQ60 294 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 MIEF1Q9NQG6 463 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 DDX18Q9NVP1 670 aaKnown RBP11.37□□□□□ -0.59
SKA1-205ENST00000494518 VDAC3Q9Y277 283 aa11.37□□□□□ -0.59
SKA1-205ENST00000494518 C16orf97H3BN30 126 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 UPK1AO00322 258 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 EIF1AYO14602 144 aaKnown RBP11.36□□□□□ -0.59
SKA1-205ENST00000494518 EMC8O43402 210 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 AQP8O94778 261 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 CGAP01215 116 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 ENO1P06733 434 aaKnown RBP11.36□□□□□ -0.59
SKA1-205ENST00000494518 DDCP20711 480 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 LOXP28300 417 aaPredicted RBP11.36□□□□□ -0.59
SKA1-205ENST00000494518 NTSP30990 170 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 GABRA3P34903 492 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 EIF1AXP47813 144 aaKnown RBP11.36□□□□□ -0.59
SKA1-205ENST00000494518 SLC6A8P48029 635 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 PRKAA2P54646 552 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 EEFSECP57772 596 aaKnown RBP11.36□□□□□ -0.59
SKA1-205ENST00000494518 ZNF763Q0D2J5 394 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 SGCBQ16585 318 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 DECR1Q16698 335 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 GRAMD1BQ3KR37 738 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 FAM71E1Q6IPT2 247 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 ANKRD26P1Q6NSI1 321 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 APOOLQ6UXV4 268 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 PRIMA1Q86XR5 153 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 LRRC75A-AS1Q8N1F1 130 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 GATSQ8NAP1 163 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 PPP1R14CQ8TAE6 165 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 FBXO30Q8TB52 745 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 PIK3R3Q92569 461 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 SLC9A6Q92581 669 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 GFM2Q969S9 779 aaKnown RBP11.36□□□□□ -0.59
SKA1-205ENST00000494518 C11orf24Q96F05 449 aaPredicted RBP11.36□□□□□ -0.59
SKA1-205ENST00000494518 MARK4Q96L34 752 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 NPAS1Q99742 590 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 PIP5K1AQ99755 562 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 SLC39A3Q9BRY0 314 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 PRRG4Q9BZD6 226 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 SHCBP1LQ9BZQ2 653 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 STMN4Q9H169 189 aaPredicted RBP11.36□□□□□ -0.59
SKA1-205ENST00000494518 GSTO2Q9H4Y5 243 aa11.36□□□□□ -0.59
SKA1-205ENST00000494518 PTGES2Q9H7Z7 377 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms