RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 ZNF155Q12901 538 aaPredicted RBP12.49□□□□□ -0.41
VARS-227ENST00000489979 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.49□□□□□ -0.41
VARS-227ENST00000489979 GLYR1Q49A26 553 aaPredicted RBP12.49□□□□□ -0.41
VARS-227ENST00000489979 SH2D4BQ5SQS7 431 aa12.49□□□□□ -0.41
VARS-227ENST00000489979 LGSNQ5TDP6 509 aa12.49□□□□□ -0.41
VARS-227ENST00000489979 ADAM5Q6NVV9 412 aa12.49□□□□□ -0.41
VARS-227ENST00000489979 BEND4Q6ZU67 534 aa12.49□□□□□ -0.41
VARS-227ENST00000489979 RPS27LQ71UM5 84 aaKnown RBP12.49□□□□□ -0.41
VARS-227ENST00000489979 CCDC25Q86WR0 208 aa12.49□□□□□ -0.41
VARS-227ENST00000489979 OR7G2Q8NG99 324 aa12.49□□□□□ -0.41
VARS-227ENST00000489979 FBXW5Q969U6 566 aa12.49□□□□□ -0.41
VARS-227ENST00000489979 GTPBP3Q969Y2 492 aaKnown RBP12.49□□□□□ -0.41
VARS-227ENST00000489979 HBEGFQ99075 208 aa12.49□□□□□ -0.41
VARS-227ENST00000489979 BRF2Q9HAW0 419 aa12.49□□□□□ -0.41
VARS-227ENST00000489979 TAS2R9Q9NYW1 312 aa12.49□□□□□ -0.41
VARS-227ENST00000489979 GRHL1Q9NZI5 618 aa12.49□□□□□ -0.41
VARS-227ENST00000489979 ABCG2Q9UNQ0 655 aa12.49□□□□□ -0.41
VARS-227ENST00000489979 GPR52Q9Y2T5 361 aa12.49□□□□□ -0.41
VARS-227ENST00000489979 RNF115Q9Y4L5 304 aa12.49□□□□□ -0.41
VARS-227ENST00000489979 MAGED1Q9Y5V3 778 aaPredicted RBP12.49□□□□□ -0.41
VARS-227ENST00000489979 SAR1BQ9Y6B6 198 aa12.49□□□□□ -0.41
VARS-227ENST00000489979 CADP27708 2225 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 ALPK2Q86TB3 2170 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 A8MV72 311 aaPredicted RBP12.48□□□□□ -0.41
VARS-227ENST00000489979 STX16-NPEPL1H3BU86 382 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 PPP6CO00743 305 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 STX16O14662 325 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 CLOCKO15516 846 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 GMFGO60234 142 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 PLOD3O60568 738 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 ADAM11O75078 769 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 F12P00748 615 aaPredicted RBP12.48□□□□□ -0.41
VARS-227ENST00000489979 IGHV4-39P01824 125 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 IL3P08700 152 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 DANCRP0C864 163 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 TYK2P29597 1187 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 PAFAH1B1P43034 410 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 MAGEA4P43358 317 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 PSG6Q00889 435 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 LETMD1Q6P1Q0 360 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 MARCH3Q86UD3 253 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 SMAP2Q8WU79 429 aaPredicted RBP12.48□□□□□ -0.41
VARS-227ENST00000489979 NEUROG1Q92886 237 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 TACO1Q9BSH4 297 aaKnown RBP12.48□□□□□ -0.41
VARS-227ENST00000489979 OR10A4Q9H209 315 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 VPS11Q9H270 941 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 NMRK1Q9NWW6 199 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 SENP1Q9P0U3 644 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 MCM8Q9UJA3 840 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 LIPT1Q9Y234 373 aa12.48□□□□□ -0.41
VARS-227ENST00000489979 FAM187AA6NFU0 413 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 NDUFS7O75251 213 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 TSPAN8P19075 237 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 PSMB1P20618 241 aaKnown RBP12.47□□□□□ -0.41
VARS-227ENST00000489979 PLTPP55058 493 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 FAPQ12884 760 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 UAP1Q16222 522 aaPredicted RBP12.47□□□□□ -0.41
VARS-227ENST00000489979 TMEM44Q2T9K0 475 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 CYP27C1Q4G0S4 372 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 DNM1P46Q6ZS02 220 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 STK32CQ86UX6 486 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 SAMD14Q8IZD0 417 aaPredicted RBP12.47□□□□□ -0.41
VARS-227ENST00000489979 FAM9CQ8IZT9 166 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 OR10D3Q8NH80 312 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 S100PBPQ96BU1 408 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 C12orf49Q9H741 205 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 SLC35C2Q9NQQ7 365 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 GIMAP4Q9NUV9 329 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 FAM120CQ9NX05 1096 aaKnown RBP12.47□□□□□ -0.41
VARS-227ENST00000489979 XPR1Q9UBH6 696 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 VPS29Q9UBQ0 182 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 MCTS1Q9ULC4 181 aaKnown RBP12.47□□□□□ -0.41
VARS-227ENST00000489979 TMCO1Q9UM00 188 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 SNX6Q9UNH7 406 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 FREM1Q5H8C1 2179 aa12.47□□□□□ -0.41
VARS-227ENST00000489979 A0A1W2PP18 115 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 RAD51CO43502 376 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 PCDH7O60245 1069 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 COQ9O75208 318 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 SMIM24O75264 130 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 OTCP00480 354 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 OPN1LWP04000 364 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 CD3EP07766 207 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 THBS1P07996 1170 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 RPS17P08708 135 aaKnown RBP12.46□□□□□ -0.41
VARS-227ENST00000489979 RBP1P09455 135 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 RFX3P48380 749 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 CLK3P49761 638 aaKnown RBP12.46□□□□□ -0.41
VARS-227ENST00000489979 SERPINB8P50452 374 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 CDH13P55290 713 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 RAE1P78406 368 aaKnown RBP12.46□□□□□ -0.41
VARS-227ENST00000489979 TSC22D1Q15714 1073 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 DECR1Q16698 335 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 TCHHL1Q5QJ38 904 aaPredicted RBP12.46□□□□□ -0.41
VARS-227ENST00000489979 NCMAPQ5T1S8 102 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 GALNT10Q86SR1 603 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 STEAP2Q8NFT2 490 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 ADGRG7Q96K78 797 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 GLRX2Q9NS18 164 aa12.46□□□□□ -0.41
VARS-227ENST00000489979 STOML1Q9UBI4 398 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms