RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 SERHLQ9NQF3 203 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 GPATCH2Q9NW75 528 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 ZNF835Q9Y2P0 537 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 MYO7BQ6PIF6 2116 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 C17orf51A8MQB3 221 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 EDF1O60869 148 aaKnown RBP13.47□□□□□ -0.25
USP4-212ENST00000486549 KCNK2O95069 426 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 UTS2O95399 124 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 IGHG3P01860 377 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 PTPN6P29350 595 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 CASP9P55211 416 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 GRAMD1BQ3KR37 738 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 EXOSC6Q5RKV6 272 aaKnown RBP13.47□□□□□ -0.25
USP4-212ENST00000486549 DNAJC14Q6Y2X3 702 aaPredicted RBP13.47□□□□□ -0.25
USP4-212ENST00000486549 Q6ZPB1 254 aaPredicted RBP13.47□□□□□ -0.25
USP4-212ENST00000486549 C6orf120Q7Z4R8 191 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 WDSUB1Q8N9V3 476 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 GLB1L3Q8NCI6 653 aaPredicted RBP13.47□□□□□ -0.25
USP4-212ENST00000486549 OR5D16Q8NGK9 328 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 FAM57AQ8TBR7 257 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 CCDC115Q96NT0 180 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 OR7D2Q96RA2 312 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 PANX1Q96RD7 426 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 STACQ99469 402 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 INPP5KQ9BT40 448 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 CCDC28BQ9BUN5 200 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 BTBD2Q9BX70 525 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 PIGUQ9H490 435 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 SDR39U1Q9NRG7 319 aaPredicted RBP13.47□□□□□ -0.25
USP4-212ENST00000486549 FBXO34Q9NWN3 711 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 QPCTLQ9NXS2 382 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 ZIM2Q9NZV7 527 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 PPP4R1LQ9P1A2 415 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 BTNL2Q9UIR0 455 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 DCTN4Q9UJW0 460 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 KCNE3Q9Y6H6 103 aa13.47□□□□□ -0.25
USP4-212ENST00000486549 SPTAN1Q13813 2472 aaKnown RBP13.47□□□□□ -0.25
USP4-212ENST00000486549 AQP7O14520 342 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 FADS1O60427 444 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 ESRRAP11474 423 aaPredicted RBP13.46□□□□□ -0.25
USP4-212ENST00000486549 MATN1P21941 496 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 UQCRC2P22695 453 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 TCEA1P23193 301 aaKnown RBP13.46□□□□□ -0.25
USP4-212ENST00000486549 CHI3L1P36222 383 aaPredicted RBP13.46□□□□□ -0.25
USP4-212ENST00000486549 CLK3P49761 638 aaKnown RBP13.46□□□□□ -0.25
USP4-212ENST00000486549 POLR2JP52435 117 aaKnown RBP13.46□□□□□ -0.25
USP4-212ENST00000486549 GAS1P54826 345 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 GUCY1A3Q02108 690 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 TIGD2Q4W5G0 525 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 ZAR1Q86SH2 424 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 YRDCQ86U90 279 aaKnown RBP13.46□□□□□ -0.25
USP4-212ENST00000486549 MARCH3Q86UD3 253 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 DOLPP1Q86YN1 238 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 PLCZ1Q86YW0 608 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 OR5M9Q8NGP3 310 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 RFWD2Q8NHY2 731 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 RNF138Q8WVD3 245 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 RELTQ969Z4 430 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 NTNG2Q96CW9 530 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 SLC35A5Q9BS91 424 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 TBL1XR1Q9BZK7 514 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 UBQLN3Q9H347 655 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 SERHL2Q9H4I8 314 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 DUSP22Q9NRW4 184 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 GIN1Q9NXP7 522 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 SPRR3Q9UBC9 169 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 SUCOQ9UBS9 1254 aaKnown RBP13.46□□□□□ -0.25
USP4-212ENST00000486549 ABCG2Q9UNQ0 655 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 MAST4O15021 2626 aa13.46□□□□□ -0.25
USP4-212ENST00000486549 UTP20O75691 2785 aaKnown RBP13.45□□□□□ -0.26
USP4-212ENST00000486549 C15orf38-AP3S2A0A0A6YYH1 394 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 A0A0G2JND7 137 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 A0A1B0GVC2 190 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 ATP8B1O43520 1251 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 SUSD5O60279 629 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 HCN1O60741 890 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 ZG16O60844 167 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 IL6P05231 212 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 HPNP05981 417 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 GSNP06396 782 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 ENDOUP21128 410 aaKnown RBP13.45□□□□□ -0.26
USP4-212ENST00000486549 ATP6V1C1P21283 382 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 CDKN2CP42773 168 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 ZFP36L2P47974 494 aaKnown RBP13.45□□□□□ -0.26
USP4-212ENST00000486549 EIPR1Q53HC9 387 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 WIPI1Q5MNZ9 446 aaPredicted RBP13.45□□□□□ -0.26
USP4-212ENST00000486549 DCST2Q5T1A1 773 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 ZNF621Q6ZSS3 439 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 NCCRP1Q6ZVX7 275 aaPredicted RBP13.45□□□□□ -0.26
USP4-212ENST00000486549 FAM83FQ8NEG4 500 aaPredicted RBP13.45□□□□□ -0.26
USP4-212ENST00000486549 OR4K17Q8NGC6 315 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 NEIL3Q8TAT5 605 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 FAM110BQ8TC76 370 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 VPS33AQ96AX1 596 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 SARAFQ96BY9 339 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 CCDC120Q96HB5 630 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 PHF12Q96QT6 1004 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 G6PC3Q9BUM1 346 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 RTN4RQ9BZR6 473 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 OR51I1Q9H343 314 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms