RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 SEM1Q6ZVN7 128 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 WDR53Q7Z5U6 358 aaPredicted RBP8.31□□□□□ -1.08
SF3A1-206ENST00000471037 C9orf40Q8IXQ3 194 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 ULK2Q8IYT8 1036 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 DND1Q8IYX4 353 aaKnown RBP8.31□□□□□ -1.08
SF3A1-206ENST00000471037 MMP21Q8N119 569 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 LRRC25Q8N386 305 aaPredicted RBP8.31□□□□□ -1.08
SF3A1-206ENST00000471037 POU5F2Q8N7G0 328 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 RELL2Q8NC24 303 aaPredicted RBP8.31□□□□□ -1.08
SF3A1-206ENST00000471037 SLC22A8Q8TCC7 542 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 TANKQ92844 425 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 VPS33AQ96AX1 596 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 KLHL29Q96CT2 875 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 RCN3Q96D15 328 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 SPACA9Q96E40 222 aaPredicted RBP8.31□□□□□ -1.08
SF3A1-206ENST00000471037 ITCHQ96J02 903 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 OR52E6Q96RD3 313 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 CNPPD1Q9BV87 410 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 RPF2Q9H7B2 306 aaKnown RBP8.31□□□□□ -1.08
SF3A1-206ENST00000471037 EFCAB1Q9HAE3 211 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 ACKR4Q9NPB9 350 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 SLC35C2Q9NQQ7 365 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 NDE1Q9NXR1 346 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 UTS2RQ9UKP6 389 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 CES1P1Q9UKY3 287 aa8.31□□□□□ -1.08
SF3A1-206ENST00000471037 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.31□□□□□ -1.08
SF3A1-206ENST00000471037 MYOCOSA0A1B0GUC4 107 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 PRSS51A0A1B0GVH4 220 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 LRRC3CA6NJW4 275 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 FBP2O00757 339 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 DVL2O14641 736 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 MRASO14807 208 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 AIM2O14862 343 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 PDPK1O15530 556 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 PRKRAO75569 313 aaKnown RBP8.3□□□□□ -1.08
SF3A1-206ENST00000471037 NPPAP01160 153 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 RFPL3SP0C7P2 107 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 TNNI3P19429 210 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 CSNK2A2P19784 350 aaPredicted RBP8.3□□□□□ -1.08
SF3A1-206ENST00000471037 NTSP30990 170 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 UQCRC1P31930 480 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 CEACAM8P31997 349 aaPredicted RBP8.3□□□□□ -1.08
SF3A1-206ENST00000471037 PIGAP37287 484 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 FRKP42685 505 aaPredicted RBP8.3□□□□□ -1.08
SF3A1-206ENST00000471037 STT3AP46977 705 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 CPA2P48052 419 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 TRPC1P48995 793 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 ASCL1P50553 236 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 WNT3P56703 355 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 ADAM8P78325 824 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 PHC1P78364 1004 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 DAZAP2Q15038 168 aaPredicted RBP8.3□□□□□ -1.08
SF3A1-206ENST00000471037 MLC1Q15049 377 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 ZNF385BQ569K4 471 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 SLC22A10Q63ZE4 541 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 OR4F3Q6IEY1 312 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 ANKRD26P1Q6NSI1 321 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 PAMR1Q6UXH9 720 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 HACD2Q6Y1H2 254 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 CDC20BQ86Y33 519 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 DPP10Q8N608 796 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 SLC15A4Q8N697 577 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 OR4K14Q8NGD5 310 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 GOT1L1Q8NHS2 421 aaPredicted RBP8.3□□□□□ -1.08
SF3A1-206ENST00000471037 ZFP28Q8NHY6 868 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 NEIL3Q8TAT5 605 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 FAM222BQ8WU58 562 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 RNASE6Q93091 150 aaKnown RBP8.3□□□□□ -1.08
SF3A1-206ENST00000471037 EXOSC8Q96B26 276 aaKnown RBP8.3□□□□□ -1.08
SF3A1-206ENST00000471037 ANKRD9Q96BM1 317 aaPredicted RBP8.3□□□□□ -1.08
SF3A1-206ENST00000471037 ROPN1LQ96C74 230 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 ZBED6CLQ96FA7 236 aaPredicted RBP8.3□□□□□ -1.08
SF3A1-206ENST00000471037 LRRC46Q96FV0 321 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 SENP5Q96HI0 755 aaPredicted RBP8.3□□□□□ -1.08
SF3A1-206ENST00000471037 CCDC115Q96NT0 180 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 EXO5Q9H790 373 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 NEUROD4Q9HD90 331 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 ZFP64Q9NPA5 681 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 ACSS1Q9NUB1 689 aaPredicted RBP8.3□□□□□ -1.08
SF3A1-206ENST00000471037 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.3□□□□□ -1.08
SF3A1-206ENST00000471037 GID8Q9NWU2 228 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 CNIH4Q9P003 139 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 BTNL2Q9UIR0 455 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 FOXD3Q9UJU5 478 aaPredicted RBP8.3□□□□□ -1.08
SF3A1-206ENST00000471037 BOKQ9UMX3 212 aaPredicted RBP8.3□□□□□ -1.08
SF3A1-206ENST00000471037 PLEKHA6Q9Y2H5 1048 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 CHCHD2Q9Y6H1 151 aaPredicted RBP8.3□□□□□ -1.08
SF3A1-206ENST00000471037 ZNF780BQ9Y6R6 833 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 ACANP16112 2415 aa8.3□□□□□ -1.08
SF3A1-206ENST00000471037 NIPBLQ6KC79 2804 aaeCLIP8.3□□□□□ -1.08
SF3A1-206ENST00000471037 ABCA4P78363 2273 aa8.29□□□□□ -1.08
SF3A1-206ENST00000471037 A0A096LPI6 279 aa8.29□□□□□ -1.08
SF3A1-206ENST00000471037 A0A1W2PRB8 838 aa8.29□□□□□ -1.08
SF3A1-206ENST00000471037 GLOD5A6NK44 160 aa8.29□□□□□ -1.08
SF3A1-206ENST00000471037 MYO1GB0I1T2 1018 aa8.29□□□□□ -1.08
SF3A1-206ENST00000471037 B2RBV5 119 aa8.29□□□□□ -1.08
SF3A1-206ENST00000471037 RFXANKO14593 260 aa8.29□□□□□ -1.08
SF3A1-206ENST00000471037 PGRMC2O15173 223 aa8.29□□□□□ -1.08
SF3A1-206ENST00000471037 FGF17O60258 216 aa8.29□□□□□ -1.08
SF3A1-206ENST00000471037 SCN2BO60939 215 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms