RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 PRKAR1BP31321 381 aa19.61■□□□□ 0.73
PTPRF-207ENST00000436724 POU6F2P78424 691 aaPredicted RBP19.61■□□□□ 0.73
PTPRF-207ENST00000436724 LSM11P83369 360 aaKnown RBP eCLIP19.61■□□□□ 0.73
PTPRF-207ENST00000436724 PROX2Q3B8N5 592 aa19.61■□□□□ 0.73
PTPRF-207ENST00000436724 ARHGAP40Q5TG30 622 aa19.61■□□□□ 0.73
PTPRF-207ENST00000436724 XAF1Q6GPH4 301 aa19.61■□□□□ 0.73
PTPRF-207ENST00000436724 LAIR2Q6ISS4 152 aa19.61■□□□□ 0.73
PTPRF-207ENST00000436724 ZNF836Q6ZNA1 936 aa19.61■□□□□ 0.73
PTPRF-207ENST00000436724 RABEPKQ7Z6M1 372 aa19.61■□□□□ 0.73
PTPRF-207ENST00000436724 PEX5LQ8IYB4 626 aa19.61■□□□□ 0.73
PTPRF-207ENST00000436724 SLC38A9Q8NBW4 561 aa19.61■□□□□ 0.73
PTPRF-207ENST00000436724 ATOH1Q92858 354 aaPredicted RBP19.61■□□□□ 0.73
PTPRF-207ENST00000436724 VSTM2LQ96N03 204 aa19.61■□□□□ 0.73
PTPRF-207ENST00000436724 PNO1Q9NRX1 252 aaKnown RBP19.61■□□□□ 0.73
PTPRF-207ENST00000436724 SLC13A4Q9UKG4 626 aa19.61■□□□□ 0.73
PTPRF-207ENST00000436724 NTNG1Q9Y2I2 539 aa19.61■□□□□ 0.73
PTPRF-207ENST00000436724 GMPPBQ9Y5P6 360 aa19.61■□□□□ 0.73
PTPRF-207ENST00000436724 AGAP5A6NIR3 686 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 SYT5O00445 386 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 KCNK2O95069 426 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 CKMT1AP12532 417 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 AGXTP21549 392 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 AVPR2P30518 371 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 IL5RAQ01344 420 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 DCST1Q5T197 706 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 BROXQ5VW32 411 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 LAPTM4BQ86VI4 370 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 CCDC71Q8IV32 467 aaPredicted RBP19.6■□□□□ 0.73
PTPRF-207ENST00000436724 ZNF619Q8N2I2 560 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 C16orf52Q8NHV5 167 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 CNIH3Q8TBE1 160 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 HDAC2Q92769 488 aaKnown RBP19.6■□□□□ 0.73
PTPRF-207ENST00000436724 HOXB13Q92826 284 aaPredicted RBP19.6■□□□□ 0.73
PTPRF-207ENST00000436724 UBE2FQ969M7 185 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 CLIP3Q96DZ5 547 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 ARHGDIGQ99819 225 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 ADNPQ9H2P0 1102 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 MAN2C1Q9NTJ4 1040 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 NDRG4Q9ULP0 352 aaKnown RBP19.6■□□□□ 0.73
PTPRF-207ENST00000436724 A0A1W2PPW3 197 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 C17orf105B2RV13 164 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 FOXD2O60548 495 aaPredicted RBP19.6■□□□□ 0.73
PTPRF-207ENST00000436724 SYPP08247 313 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 ANKRD34CP0C6C1 535 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 CBLP22681 906 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 TRHRP34981 398 aaPredicted RBP19.6■□□□□ 0.73
PTPRF-207ENST00000436724 MPLP40238 635 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 ENTPD1P49961 510 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 RPP38P78345 283 aaKnown RBP19.6■□□□□ 0.73
PTPRF-207ENST00000436724 C6orf141Q5SZD1 244 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 TMEM151BQ8IW70 566 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 ZNF321PQ8N8H1 164 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 PTPMT1Q8WUK0 201 aaPredicted RBP19.6■□□□□ 0.73
PTPRF-207ENST00000436724 OR1F2PQ96R84 312 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 FNDC11Q9BVV2 318 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 OR10A5Q9H207 317 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 TMCC3Q9ULS5 477 aa19.6■□□□□ 0.73
PTPRF-207ENST00000436724 CPSF4LA6NMK7 179 aaKnown RBP19.59■□□□□ 0.73
PTPRF-207ENST00000436724 ABCB7O75027 752 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 SEC14L2O76054 403 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 FUT7Q11130 342 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 SERTAD2Q14140 314 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 ZNF528Q3MIS6 628 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 NPSR1Q6W5P4 371 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 NLGN4XQ8N0W4 816 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 FAM81AQ8TBF8 368 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 PRRC1Q96M27 445 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 LMF2Q9BU23 707 aaKnown RBP19.59■□□□□ 0.73
PTPRF-207ENST00000436724 GABARAPL3Q9BY60 117 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 SAP130Q9H0E3 1048 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 CTSFQ9UBX1 484 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 IFT52Q9Y366 437 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 KIAA0513O60268 411 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 OR10H3O60404 316 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 BRINP1O60477 761 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 PRAMEF2O60811 474 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 NTN1O95631 604 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 IGKV1D-16P01601 117 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 CLPSP04118 112 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 KEAP1Q14145 624 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 SHISA6Q6ZSJ9 500 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 ARSGQ96EG1 525 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 FUZQ9BT04 418 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 SLC7A5P2Q9GIP4 190 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 ZNF556Q9HAH1 456 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 ZNF232Q9UNY5 417 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 POFUT2Q9Y2G5 429 aa19.59■□□□□ 0.73
PTPRF-207ENST00000436724 GDF9O60383 454 aa19.58■□□□□ 0.72
PTPRF-207ENST00000436724 RGS8P57771 180 aaPredicted RBP19.58■□□□□ 0.72
PTPRF-207ENST00000436724 EEF1A1P68104 462 aaKnown RBP19.58■□□□□ 0.72
PTPRF-207ENST00000436724 ACY1Q03154 408 aa19.58■□□□□ 0.72
PTPRF-207ENST00000436724 LARS2Q15031 903 aaKnown RBP19.58■□□□□ 0.72
PTPRF-207ENST00000436724 ZNHIT3Q15649 155 aaPredicted RBP19.58■□□□□ 0.72
PTPRF-207ENST00000436724 PHF19Q5T6S3 580 aa19.58■□□□□ 0.72
PTPRF-207ENST00000436724 PODNL1Q6PEZ8 512 aa19.58■□□□□ 0.72
PTPRF-207ENST00000436724 SPARTQ8N0X7 666 aa19.58■□□□□ 0.72
PTPRF-207ENST00000436724 ZNF615Q8N8J6 731 aa19.58■□□□□ 0.72
PTPRF-207ENST00000436724 SENP5Q96HI0 755 aaPredicted RBP19.58■□□□□ 0.72
PTPRF-207ENST00000436724 PSD2Q9BQI7 771 aa19.58■□□□□ 0.72
PTPRF-207ENST00000436724 PLGRKTQ9HBL7 147 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms