RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 SLC7A5P2Q9GIP4 190 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 NPFFR1Q9GZQ6 430 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 ATG10Q9H0Y0 220 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 PRORYQ9H606 182 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 ANKZF1Q9H8Y5 726 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 CNOT10Q9H9A5 744 aaKnown RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 CAB39LQ9H9S4 337 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 GPN2Q9H9Y4 310 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 PELI2Q9HAT8 420 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 LHX9Q9NQ69 397 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 CD274Q9NZQ7 290 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 FBXO9Q9UK97 447 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 IKZF3Q9UKT9 509 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 TMCO1Q9UM00 188 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 CDC14AQ9UNH5 594 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 FARSAQ9Y285 508 aaKnown RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 KLHL20Q9Y2M5 609 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 KCNE2Q9Y6J6 123 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 TPRP12270 2363 aaKnown RBP2.32□□□□□ -2.04
VPS13A-208ENST00000423463 A0A096LPK6 155 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 IGKV1-8A0A0C4DH67 115 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 IQANK1A0A1B0GTG1 560 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP2.32□□□□□ -2.04
VPS13A-208ENST00000423463 TRBC2A0A5B9 178 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 HYKKA2RU49 373 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 KRT87PA6NCN2 255 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 SYCE1LA8MT33 242 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 TRIM49D1C9J1S8 452 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 H0YGG7 62 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 HSPB6O14558 160 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 MAP2K7O14733 419 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 TAPBPO15533 448 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 HCRTR1O43613 425 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 KERAO60938 352 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 STK16O75716 305 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 GUCA1CO95843 209 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 ADAP00813 363 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 CLEC3BP05452 202 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 ACAA1P09110 424 aaPredicted RBP2.32□□□□□ -2.04
VPS13A-208ENST00000423463 COX7A2P14406 83 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 LIFP15018 202 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 TCN2P20062 427 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 RORAP35398 523 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 DLSTP36957 453 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 MAGEA12P43365 314 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 SLC6A12P48065 614 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 PCYT1AP49585 367 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 CCR8P51685 355 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 VSX2P58304 361 aaPredicted RBP2.32□□□□□ -2.04
VPS13A-208ENST00000423463 ARF3P61204 181 aaPredicted RBP2.32□□□□□ -2.04
VPS13A-208ENST00000423463 UFM1P61960 85 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 RPS15AP62244 130 aaKnown RBP2.32□□□□□ -2.04
VPS13A-208ENST00000423463 TBPL1P62380 186 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 CSNK1G2P78368 415 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 DCDP81605 110 aaKnown RBP2.32□□□□□ -2.04
VPS13A-208ENST00000423463 EFNB1P98172 346 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 DLG1Q12959 904 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 GPS2Q13227 327 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 EFTUD2Q15029 972 aaKnown RBP eCLIP2.32□□□□□ -2.04
VPS13A-208ENST00000423463 TGFBIQ15582 683 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 NDUFA9Q16795 377 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 COL28A1Q2UY09 1125 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 ZNF585BQ52M93 769 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 GARNL3Q5VVW2 1013 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 METTL2BQ6P1Q9 378 aaKnown RBP2.32□□□□□ -2.04
VPS13A-208ENST00000423463 PRMT9Q6P2P2 845 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 EMBQ6PCB8 327 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 FRA10AC1Q70Z53 315 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 TRILQ7L0X0 811 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 CMC1Q7Z7K0 106 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 LCA5Q86VQ0 697 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 THOC6Q86W42 341 aaKnown RBP2.32□□□□□ -2.04
VPS13A-208ENST00000423463 TDRPQ86YL5 185 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 DSELQ8IZU8 1212 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 FBXL14Q8N1E6 418 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 MFSD9Q8NBP5 474 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 SLC38A9Q8NBW4 561 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 CAMKVQ8NCB2 501 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 DNAAF1Q8NEP3 725 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 ACMSDQ8TDX5 336 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 CT55Q8WUE5 264 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 KCTD4Q8WVF5 259 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 SLC5A11Q8WWX8 675 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 RERGQ96A58 199 aaPredicted RBP2.32□□□□□ -2.04
VPS13A-208ENST00000423463 PTERQ96BW5 349 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 RHBDF1Q96CC6 855 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 MED8Q96G25 268 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 TSNARE1Q96NA8 513 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 PRAP1Q96NZ9 151 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 CATSPER2Q96P56 530 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 ATOH8Q96SQ7 321 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 SLC25A18Q9H1K4 315 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 EHD1Q9H4M9 534 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 NT5DC2Q9H857 520 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 CLK4Q9HAZ1 481 aaKnown RBP2.32□□□□□ -2.04
VPS13A-208ENST00000423463 CUTCQ9NTM9 273 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 TXLNGQ9NUQ3 528 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 ABCF3Q9NUQ8 709 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 DNAJC11Q9NVH1 559 aa2.32□□□□□ -2.04
VPS13A-208ENST00000423463 NUDT4Q9NZJ9 180 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms