RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 GALR3O60755 368 aaPredicted RBP6.81□□□□□ -1.32
UPF2-203ENST00000397053 KITLGP21583 273 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 SF3A2Q15428 464 aaKnown RBP6.81□□□□□ -1.32
UPF2-203ENST00000397053 ATG9BQ674R7 924 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 SCRN2Q96FV2 425 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 TRIB3Q96RU7 358 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 NICN1Q9BSH3 213 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 UNKLQ9H9P5 680 aaKnown RBP6.81□□□□□ -1.32
UPF2-203ENST00000397053 KCND1Q9NSA2 647 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 ERVK13-1Q9NX77 482 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 ETAA1Q9NY74 926 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 VSX1Q9NZR4 365 aaPredicted RBP6.81□□□□□ -1.32
UPF2-203ENST00000397053 LRFN1Q9P244 771 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 PADI1Q9ULC6 663 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 UNC13AQ9UPW8 1703 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 CDC42BPBQ9Y5S2 1711 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 FUOMA2VDF0 154 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 IFNA17P01571 189 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 ZNF14P17017 642 aaPredicted RBP6.81□□□□□ -1.32
UPF2-203ENST00000397053 RAB4AP20338 218 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 PBX1P40424 430 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 PRPS1P60891 318 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 CDK3Q00526 305 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 HNRNPA1L2Q32P51 320 aaKnown RBP6.81□□□□□ -1.32
UPF2-203ENST00000397053 OR52W1Q6IF63 320 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 TMEM71Q6P5X7 295 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 WDR53Q7Z5U6 358 aaPredicted RBP6.81□□□□□ -1.32
UPF2-203ENST00000397053 TCEAL8Q8IYN2 117 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 OR52N2Q8NGI0 321 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 SFXN5Q8TD22 340 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 C16orf78Q8WTQ4 265 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 GIMAP5Q96F15 307 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 TIMD4Q96H15 378 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 TWSG1Q9GZX9 223 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 CD93Q9NPY3 652 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 NDUFAF4Q9P032 175 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 WRAP73Q9P2S5 460 aaPredicted RBP6.81□□□□□ -1.32
UPF2-203ENST00000397053 MYOTQ9UBF9 498 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 MAB21L2Q9Y586 359 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 SETBP1Q9Y6X0 1596 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 IGKV6D-41A0A0C4DH26 115 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 A0A1W2PPV4 95 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 CEBPZOSA8MTT3 80 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 SCRG1O75711 98 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 PRLP01236 227 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 TP53P04637 393 aaPredicted RBP6.81□□□□□ -1.32
UPF2-203ENST00000397053 FBXO45P0C2W1 286 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 ARSAP15289 507 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 ERP29P30040 261 aaKnown RBP6.81□□□□□ -1.32
UPF2-203ENST00000397053 PTGER4P35408 488 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 LTC4SQ16873 150 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 NRMQ8IXM6 262 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 RDH10Q8IZV5 341 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 PHOSPHO2Q8TCD6 241 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 VRK1Q99986 396 aaPredicted RBP6.81□□□□□ -1.32
UPF2-203ENST00000397053 LMF2Q9BU23 707 aaKnown RBP6.81□□□□□ -1.32
UPF2-203ENST00000397053 ZNF576Q9H609 170 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 DECR2Q9NUI1 292 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 TAS2R8Q9NYW2 309 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 SIX4Q9UIU6 781 aa6.81□□□□□ -1.32
UPF2-203ENST00000397053 AGLP35573 1532 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 TRAV18A0A075B6X5 111 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 CRYM-AS1A6NIL9 109 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 SH2D7A6NKC9 451 aaPredicted RBP6.8□□□□□ -1.32
UPF2-203ENST00000397053 GABRR3A8MPY1 467 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 TRAPPC2LH3BP13 241 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 TIMM8AO60220 97 aaPredicted RBP6.8□□□□□ -1.32
UPF2-203ENST00000397053 RHCEP18577 417 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 EIF2B1Q14232 305 aaKnown RBP6.8□□□□□ -1.32
UPF2-203ENST00000397053 SMAD2Q15796 467 aaKnown RBP6.8□□□□□ -1.32
UPF2-203ENST00000397053 PSAPL1Q6NUJ1 521 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 NIPAL3Q6P499 406 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 GPR155Q7Z3F1 870 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 KIF18BQ86Y91 864 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 ANKLE1Q8NAG6 615 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 OR4K5Q8NGD3 323 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 H1FXQ92522 213 aaKnown RBP6.8□□□□□ -1.32
UPF2-203ENST00000397053 FRZBQ92765 325 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 FKBP10Q96AY3 582 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 ARL6Q9H0F7 186 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 ATP13A2Q9NQ11 1180 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 PTTG2Q9NZH5 202 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 LTBP3Q9NS15 1303 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 ERCC6L2Q5T890 1561 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 NPIPA5A0A0B4J1W7 369 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 A0A1B0GTW7 788 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 NPIPA7E9PJI5 369 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 SGK494L7N484 410 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 TOR1AO14656 332 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 LSM1O15116 133 aaKnown RBP6.8□□□□□ -1.32
UPF2-203ENST00000397053 NPIPA8P0DM63 369 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 ALDH3B1P43353 468 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 KCNJ11Q14654 390 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 CNN3Q15417 329 aaKnown RBP6.8□□□□□ -1.32
UPF2-203ENST00000397053 TLDC1Q6P9B6 456 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 MEX3BQ6ZN04 569 aaKnown RBP6.8□□□□□ -1.32
UPF2-203ENST00000397053 ERMP1Q7Z2K6 904 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 SGPP2Q8IWX5 399 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 KRTCAP2Q8N6L1 136 aa6.8□□□□□ -1.32
UPF2-203ENST00000397053 STK35Q8TDR2 534 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms