RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 HSPA12BQ96MM6 686 aa13.45□□□□□ -0.26
RTF1-201ENST00000389629 KATNBL1Q9H079 304 aa13.45□□□□□ -0.26
RTF1-201ENST00000389629 XKR8Q9H6D3 395 aa13.45□□□□□ -0.26
RTF1-201ENST00000389629 IFT46Q9NQC8 304 aa13.45□□□□□ -0.26
RTF1-201ENST00000389629 FBXL12Q9NXK8 326 aa13.45□□□□□ -0.26
RTF1-201ENST00000389629 CACNB4O00305 520 aaPredicted RBP13.44□□□□□ -0.26
RTF1-201ENST00000389629 SNRPBP14678 240 aaKnown RBP13.44□□□□□ -0.26
RTF1-201ENST00000389629 CR2P20023 1033 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 MMP12P39900 470 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 TIAL1Q01085 375 aaKnown RBP eCLIP13.44□□□□□ -0.26
RTF1-201ENST00000389629 TP53I3Q53FA7 332 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 ACSM3Q53FZ2 586 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 UNC5DQ6UXZ4 953 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 KREMEN2Q8NCW0 462 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 WDR20Q8TBZ3 569 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 ST8SIA4Q92187 359 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 GABARAPL3Q9BY60 117 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 KLHL9Q9P2J3 617 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 F8W036 122 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 H3BUI4 141 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 FZD7O75084 574 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 BLOC1S1P78537 153 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 IFITM2Q01629 132 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 CAMK2BQ13554 666 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 DUSP7Q16829 419 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 FAHD1Q6P587 224 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 HSD11B1LQ7Z5J1 315 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 IFNL1Q8IU54 200 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 PM20D2Q8IYS1 436 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 ZSCAN1Q8NBB4 408 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 RERGQ96A58 199 aaPredicted RBP13.44□□□□□ -0.26
RTF1-201ENST00000389629 ZNF354BQ96LW1 612 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 DCLRE1CQ96SD1 692 aaKnown RBP13.44□□□□□ -0.26
RTF1-201ENST00000389629 KLF16Q9BXK1 252 aaPredicted RBP13.44□□□□□ -0.26
RTF1-201ENST00000389629 PHPT1Q9NRX4 125 aaPredicted RBP13.44□□□□□ -0.26
RTF1-201ENST00000389629 TOR1AO14656 332 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 LAG3P18627 525 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 HTR2AP28223 471 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 MAP3K8P41279 467 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 GUCA1AP43080 201 aaPredicted RBP13.44□□□□□ -0.26
RTF1-201ENST00000389629 P2RY14Q15391 338 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 OLIG3Q7RTU3 272 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 CALHM3Q86XJ0 350 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 ZNF527Q8NB42 609 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 OR4M1Q8NGD0 313 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 ZNF582Q96NG8 517 aaPredicted RBP13.44□□□□□ -0.26
RTF1-201ENST00000389629 ZNF416Q9BWM5 594 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 CDCA4Q9BXL8 241 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.44□□□□□ -0.26
RTF1-201ENST00000389629 ASF1BQ9NVP2 202 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 AP1M2Q9Y6Q5 423 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 MCM3APO60318 1980 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 XKRYO14609 159 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 CD2P06729 351 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 CMPK1P30085 196 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 ETV5P41161 510 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 ETV1P50549 477 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 TPMTP51580 245 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 STXBP1P61764 594 aaKnown RBP13.44□□□□□ -0.26
RTF1-201ENST00000389629 AIMP2Q13155 320 aaKnown RBP13.44□□□□□ -0.26
RTF1-201ENST00000389629 METAP1DQ6UB28 335 aaPredicted RBP13.44□□□□□ -0.26
RTF1-201ENST00000389629 JAGN1Q8N5M9 183 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 CREB3L4Q8TEY5 395 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 ZNF689Q96CS4 500 aaPredicted RBP13.44□□□□□ -0.26
RTF1-201ENST00000389629 ZNF350Q9GZX5 532 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 SLC25A18Q9H1K4 315 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 WDR26Q9H7D7 661 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 MED16Q9Y2X0 877 aa13.44□□□□□ -0.26
RTF1-201ENST00000389629 UNC119BA6NIH7 251 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 SIX6O95475 246 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 ADH1CP00326 375 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 SLC1A3P43003 542 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 BTN3A2P78410 334 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 TSC22D1Q15714 1073 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 SIAH3Q8IW03 269 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 ZNF454Q8N9F8 522 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 NLGN4YQ8NFZ3 816 aaPredicted RBP13.43□□□□□ -0.26
RTF1-201ENST00000389629 SUN3Q8TAQ9 357 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 THEM6Q8WUY1 208 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 ZNF480Q8WV37 535 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 IGSF21Q96ID5 467 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 ERVK-19Q9WJR5 959 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 SLC27A6Q9Y2P4 619 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 GYPBP06028 91 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 TACSTD2P09758 323 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 ZNF14P17017 642 aaPredicted RBP13.43□□□□□ -0.26
RTF1-201ENST00000389629 GRK5P34947 590 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 PPM1AP35813 382 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 ILKQ13418 452 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 C18orf63Q68DL7 685 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 TMCO2Q7Z6W1 182 aaPredicted RBP13.43□□□□□ -0.26
RTF1-201ENST00000389629 RBM45Q8IUH3 476 aaKnown RBP13.43□□□□□ -0.26
RTF1-201ENST00000389629 MS4A15Q8N5U1 240 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 NANOGP1Q8N7R0 232 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 TMEM163Q8TC26 289 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 MYLIPQ8WY64 445 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 DDOQ99489 341 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 DPH1Q9BZG8 443 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 EMC3Q9P0I2 261 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 QSER1Q2KHR3 1735 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms