RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 MED27Q6P2C8 311 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 CPXM2Q8N436 756 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 OR6T1Q8NGN1 323 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 OR56A3Q8NH54 315 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 OR56B4Q8NH76 319 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 RPLP0P6Q8NHW5 317 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 TEX47Q8TBZ9 253 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 ASIC4Q96FT7 647 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 ZFP3Q96NJ6 502 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 TREX2Q9BQ50 279 aaPredicted RBP6.37□□□□□ -1.39
VPS39-202ENST00000348544 FNDC11Q9BVV2 318 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 SLC6A17Q9H1V8 727 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 AUNIPQ9H7T9 357 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 GPBP1L1Q9HC44 474 aaPredicted RBP6.37□□□□□ -1.39
VPS39-202ENST00000348544 CD93Q9NPY3 652 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 NPDC1Q9NQX5 325 aaPredicted RBP6.37□□□□□ -1.39
VPS39-202ENST00000348544 ADARB2Q9NS39 739 aaKnown RBP6.37□□□□□ -1.39
VPS39-202ENST00000348544 TDP1Q9NUW8 608 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 CNIH4Q9P003 139 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 MARK1Q9P0L2 795 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 COPZ2Q9P299 210 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 SEC14L3Q9UDX4 400 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 EXOGQ9Y2C4 368 aaKnown RBP6.37□□□□□ -1.39
VPS39-202ENST00000348544 SESN1Q9Y6P5 492 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 A0A087WUU8 490 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 OR6C65A6NJZ3 312 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 ANXA2P2A6NMY6 339 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 SOCS6O14544 535 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 PDCD5O14737 125 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 CHST10O43529 356 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 SLC28A2O43868 658 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 GMDSO60547 372 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 PEX14O75381 377 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 CBX7O95931 251 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 PLATP00750 562 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 RAB3AP20336 220 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 GALP22466 123 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 TRIM23P36406 574 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 PREPP48147 710 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 VEGFCP49767 419 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 MMP15P51511 669 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 SHC2P98077 582 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 SLBPQ14493 270 aaKnown RBP eCLIP6.36□□□□□ -1.39
VPS39-202ENST00000348544 CCL14Q16627 93 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 CLLU1OSQ5K130 101 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 HECTD3Q5T447 861 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 SLC30A6Q6NXT4 461 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 PRSS45Q7RTY3 260 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 UBE2Q1Q7Z7E8 422 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 TBC1D19Q8N5T2 526 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 ZFPM2Q8WW38 1151 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 HERVK_113Q902F9 699 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 KCTD12Q96CX2 325 aaKnown RBP6.36□□□□□ -1.39
VPS39-202ENST00000348544 TMEM169Q96HH4 297 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 LCORQ96JN0 433 aaPredicted RBP6.36□□□□□ -1.39
VPS39-202ENST00000348544 ORAI3Q9BRQ5 295 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 FAIM2Q9BWQ8 316 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.36□□□□□ -1.39
VPS39-202ENST00000348544 BTBD1Q9H0C5 482 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 DDX31Q9H8H2 851 aaKnown RBP6.36□□□□□ -1.39
VPS39-202ENST00000348544 MRPL15Q9P015 296 aaKnown RBP6.36□□□□□ -1.39
VPS39-202ENST00000348544 C5AR2Q9P296 337 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 MRPS7Q9Y2R9 242 aaKnown RBP6.36□□□□□ -1.39
VPS39-202ENST00000348544 KIF26AQ9ULI4 1882 aaPredicted RBP6.36□□□□□ -1.39
VPS39-202ENST00000348544 DOCK3Q8IZD9 2030 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 ANAPC1Q9H1A4 1944 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 TRABD2BA6NFA1 517 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 OR2AG2A6NM03 316 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 MCRIP1C9JLW8 97 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 E9PI62 339 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 J3QRE1 110 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 L7N2F9 121 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 SURF4O15260 269 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 INPPL1O15357 1258 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 HYAL3O43820 417 aaPredicted RBP6.36□□□□□ -1.39
VPS39-202ENST00000348544 B3GALNT1O75752 331 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 GATBO75879 557 aaKnown RBP6.36□□□□□ -1.39
VPS39-202ENST00000348544 SLCO2B1O94956 709 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 LDOC1O95751 146 aaPredicted RBP6.36□□□□□ -1.39
VPS39-202ENST00000348544 GNSP15586 552 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 F8A1P23610 371 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 RPS7P62081 194 aaKnown RBP6.36□□□□□ -1.39
VPS39-202ENST00000348544 GPR17Q13304 367 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 HLXQ14774 488 aaPredicted RBP6.36□□□□□ -1.39
VPS39-202ENST00000348544 SFRP4Q6FHJ7 346 aaPredicted RBP6.36□□□□□ -1.39
VPS39-202ENST00000348544 RRM2BQ7LG56 351 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 SERINC5Q86VE9 423 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 KLHDC8AQ8IYD2 350 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 CLRN3Q8NCR9 226 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 ZNF740Q8NDX6 193 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 OR1S1Q8NH92 325 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 PIGKQ92643 395 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 PLD4Q96BZ4 506 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 ECHDC3Q96DC8 303 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 MRPS24Q96EL2 167 aaKnown RBP6.36□□□□□ -1.39
VPS39-202ENST00000348544 FERD3LQ96RJ6 166 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 LYSMD1Q96S90 227 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 SEC22CQ9BRL7 303 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 PELOQ9BRX2 385 aaKnown RBP6.36□□□□□ -1.39
VPS39-202ENST00000348544 SPATA5L1Q9BVQ7 753 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms