RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 E9PI62 339 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 SLC28A2O43868 658 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 KDM4BO94953 1096 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 KCNJ5P48544 419 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 STXBP1P61764 594 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 MINDY4Q4G0A6 757 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 FAM209BQ5JX69 171 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 OR51G2Q8NGK0 314 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 XAGE5Q8WWM1 108 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 ZNF354BQ96LW1 612 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 FCRL4Q96PJ5 515 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 SLC38A2Q96QD8 506 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 YIPF4Q9BSR8 244 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 GSDMCQ9BYG8 508 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 BRF2Q9HAW0 419 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 MIEF1Q9NQG6 463 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 CLEC4EQ9ULY5 219 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 ASB4Q9Y574 426 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 STON1Q9Y6Q2 735 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 FAM74A7A6NL05 159 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 SIX6O95475 246 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 TFP02787 698 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 ZDHHC11BP0C7U3 371 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 ATP1B2P14415 290 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 IMPA1P29218 277 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 PBLDP30039 288 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 RFX3P48380 749 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 OC90Q02509 493 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 FGL2Q14314 439 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 ETFDHQ16134 617 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 FAM74A3Q4VXF1 159 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 FAM71E1Q6IPT2 247 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 ARL9Q6T311 187 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 SIRT6Q8N6T7 355 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 OR13C5Q8NGS8 318 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 FAM46AQ96IP4 442 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 NRTNQ99748 197 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 GPR160Q9UJ42 338 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 PLXNB3Q9ULL4 1909 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 AGAP14A8MT82 685 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 CASC3O15234 703 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 SNRPBP14678 240 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 RPL17P18621 184 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 PDHA2P29803 388 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 VEGFCP49767 419 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 AP1S2P56377 157 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 SLBPQ14493 270 aaKnown RBP eCLIP12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 HBMQ6B0K9 141 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 SLC27A4Q6P1M0 643 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 SFXN4Q6P4A7 337 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 SMARCD3Q6STE5 483 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 ADAMTS14Q8WXS8 1223 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 UBL7Q96S82 380 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 TREX2Q9BQ50 279 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 ZNF416Q9BWM5 594 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 MED20Q9H944 212 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 PCDHGA9Q9Y5G4 932 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 ANXA2P2A6NMY6 339 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 HMGN4O00479 90 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 PDCD5O14737 125 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 RNF13O43567 381 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 EPPINO95925 133 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 GNSP15586 552 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 MMP12P39900 470 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 SLC3A1Q07837 685 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 CLLU1OSQ5K130 101 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 FAAP20Q6NZ36 180 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 MED27Q6P2C8 311 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 NHLRC1Q6VVB1 395 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 RPTNQ6XPR3 784 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 MAMSTRQ6ZN01 415 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 KLHL36Q8N4N3 616 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 MORN4Q8NDC4 146 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 OR51Q1Q8NH59 317 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 RPLP0P6Q8NHW5 317 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 TEX47Q8TBZ9 253 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 FANK1Q8TC84 345 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 CAPNS2Q96L46 248 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 NPAS1Q99742 590 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 DPH7Q9BTV6 452 aa12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 TTYH1Q9H313 450 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-201ENST00000331194 KIF26AQ9ULI4 1882 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 A0A1B0GVI7 797 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 ADAM12O43184 909 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 NPR2P20594 1047 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 HOXC8P31273 242 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 TRIM23P36406 574 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 MANFP55145 182 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 GPR17Q13304 367 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 SNTB2Q13425 540 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 SLC25A30Q5SVS4 291 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 ZNF322Q6U7Q0 402 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 SLCO4C1Q6ZQN7 724 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 C6orf120Q7Z4R8 191 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 OR4Q3Q8NH05 313 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 ZNF707Q96C28 371 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 CHFRQ96EP1 664 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 IER2Q9BTL4 223 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 TTTY10Q9BZA0 68 aa12.6□□□□□ -0.39
CCDC88C-201ENST00000331194 TMEM168Q9H0V1 697 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms