RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 STSP08842 583 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 RNF224P0DH78 156 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 ABOP16442 354 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 NCF2P19878 526 aaPredicted RBP12.2□□□□□ -0.46
VPS28-201ENST00000292510 PTPN6P29350 595 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 MDH1P40925 334 aaKnown RBP12.2□□□□□ -0.46
VPS28-201ENST00000292510 MRPL19P49406 292 aaKnown RBP12.2□□□□□ -0.46
VPS28-201ENST00000292510 GAS1P54826 345 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 PSMD4P55036 377 aaKnown RBP12.2□□□□□ -0.46
VPS28-201ENST00000292510 STX5Q13190 355 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 DCST2Q5T1A1 773 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 SAXO2Q658L1 398 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 BHLHB9Q6PI77 547 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 CLEC18BQ6UXF7 455 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 APOOLQ6UXV4 268 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 ZNF621Q6ZSS3 439 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 TRILQ7L0X0 811 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 OLIG3Q7RTU3 272 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 MARCH3Q86UD3 253 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 FJX1Q86VR8 437 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 FUNDC1Q8IVP5 155 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 FAM26EQ8N5C1 309 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 CLEC18CQ8NCF0 446 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 OR1J4Q8NGS1 313 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 GOT1L1Q8NHS2 421 aaPredicted RBP12.2□□□□□ -0.46
VPS28-201ENST00000292510 BTBD2Q9BX70 525 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 OR51I1Q9H343 314 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 UBQLN3Q9H347 655 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 LDAHQ9H6V9 325 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 SLC6A13Q9NSD5 602 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 GIN1Q9NXP7 522 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 B4GALT7Q9UBV7 327 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 TINAGQ9UJW2 476 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 ZNF835Q9Y2P0 537 aa12.2□□□□□ -0.46
VPS28-201ENST00000292510 NPIPA5A0A0B4J1W7 369 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 CCDC154A6NI56 674 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 NPIPA7E9PJI5 369 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 AGFG2O95081 481 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 KRT16P08779 473 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 NPIPA8P0DM63 369 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 ENDOUP21128 410 aaKnown RBP12.19□□□□□ -0.46
VPS28-201ENST00000292510 PTGS2P35354 604 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 CHI3L1P36222 383 aaPredicted RBP12.19□□□□□ -0.46
VPS28-201ENST00000292510 RNF144AP50876 292 aaPredicted RBP12.19□□□□□ -0.46
VPS28-201ENST00000292510 SQLEQ14534 574 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 TOMM20Q15388 145 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 GTDC1Q4AE62 458 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 ARHGAP11AQ6P4F7 1023 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 TNFAIP8L2Q6P589 184 aaPredicted RBP12.19□□□□□ -0.46
VPS28-201ENST00000292510 SLC2A7Q6PXP3 512 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 C3P1Q6ZMU1 363 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 OR4C3Q8NH37 302 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 PNPT1Q8TCS8 783 aaKnown RBP12.19□□□□□ -0.46
VPS28-201ENST00000292510 RAB8BQ92930 207 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 NEURL3Q96EH8 262 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 SIKE1Q9BRV8 207 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 TMEM120AQ9BXJ8 343 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 CCDC134Q9H6E4 229 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 CCDC167Q9P0B6 97 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 SPRR3Q9UBC9 169 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 FBXL2Q9UKC9 423 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 SLC5A6Q9Y289 635 aa12.19□□□□□ -0.46
VPS28-201ENST00000292510 DNAJC13O75165 2243 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 UTP20O75691 2785 aaKnown RBP12.18□□□□□ -0.46
VPS28-201ENST00000292510 TRGV5A0A0B4J1U4 118 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 A0A1B0GVC2 190 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 NPIPA2E9PIF3 369 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 NPIPA3F8WFD2 350 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 NR5A2O00482 541 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 DYNC1I1O14576 645 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 RFXANKO14593 260 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 HPNP05981 417 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 TPOP07202 933 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 OR12D1P0DN82 309 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 TROVE2P10155 538 aaKnown RBP eCLIP12.18□□□□□ -0.46
VPS28-201ENST00000292510 CAPN3P20807 821 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 TCEA1P23193 301 aaKnown RBP12.18□□□□□ -0.46
VPS28-201ENST00000292510 ELAVL4P26378 380 aaKnown RBP12.18□□□□□ -0.46
VPS28-201ENST00000292510 CA7P43166 264 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 ATP4BP51164 291 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 UBAP2LQ14157 1087 aaKnown RBP12.18□□□□□ -0.46
VPS28-201ENST00000292510 RCAN2Q14206 197 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.18□□□□□ -0.46
VPS28-201ENST00000292510 C4orf17Q53FE4 359 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 AGKQ53H12 422 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 EIPR1Q53HC9 387 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 BLOC1S3Q6QNY0 202 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 Q6ZPB1 254 aaPredicted RBP12.18□□□□□ -0.46
VPS28-201ENST00000292510 NCCRP1Q6ZVX7 275 aaPredicted RBP12.18□□□□□ -0.46
VPS28-201ENST00000292510 YRDCQ86U90 279 aaKnown RBP12.18□□□□□ -0.46
VPS28-201ENST00000292510 CD163Q86VB7 1156 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 RNF130Q86XS8 419 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 PLCZ1Q86YW0 608 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 GATSQ8NAP1 163 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 OR5M9Q8NGP3 310 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 DUSP19Q8WTR2 217 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 STON2Q8WXE9 905 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 AURKBQ96GD4 344 aaPredicted RBP12.18□□□□□ -0.46
VPS28-201ENST00000292510 EXO5Q9H790 373 aa12.18□□□□□ -0.46
VPS28-201ENST00000292510 QPCTLQ9NXS2 382 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms