RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 CHRNA1P02708 482 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 CD5P06127 495 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 RETP07949 1114 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 SFTPBP07988 381 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 ABHD2P08910 425 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 GSTA2P09210 222 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 CCDC166P0CW27 439 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 GHRP10912 638 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 MBL2P11226 248 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 RPS2P15880 293 aaKnown RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 GCFC2P16383 781 aaKnown RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 RCC1P18754 421 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 SDC1P18827 310 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 MUTP22033 750 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 CALML3P27482 149 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 MARCKSP29966 332 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 ACVR1BP36896 505 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 PMELP40967 661 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 NSFP46459 744 aaKnown RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 OR3A4PP47883 348 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 TRPC1P48995 793 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 STK19P49842 368 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 P2RY4P51582 365 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 CNN1P51911 297 aaKnown RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 SMSP52788 366 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 NUP107P57740 925 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 KIAA1024LP59773 190 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 RND3P61587 244 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 RPL8P62917 257 aaKnown RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 GSTO1P78417 241 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 TSPY1Q01534 308 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 PRKCEQ02156 737 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 ZNF45Q02386 682 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 PUDPQ08623 228 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 ZNF763Q0D2J5 394 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 ZNF154Q13106 437 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 MADCAM1Q13477 382 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 IL18R1Q13478 541 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 PDE7AQ13946 482 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 SERTAD2Q14140 314 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 ELAVL3Q14576 367 aaKnown RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 RPS6KA1Q15418 735 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 MPPED2Q15777 294 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 CAMK4Q16566 473 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 AANATQ16613 207 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 CLPPQ16740 277 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 KYAT1Q16773 422 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 SHROOM1Q2M3G4 852 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 ZNF674Q2M3X9 581 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 CNPY1Q3B7I2 92 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 TIGITQ495A1 244 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 FUT11Q495W5 492 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 AGKQ53H12 422 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 DCST2Q5T1A1 773 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 METTL11BQ5VVY1 283 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 LIPKQ5VXJ0 399 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 ARMC3Q5W041 872 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 CYB5R2Q6BCY4 276 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 PRR5LQ6MZQ0 368 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 SHQ1Q6PI26 577 aaKnown RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 OLFM4Q6UX06 510 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 ZNF562Q6V9R5 426 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 TMEM184AQ6ZMB5 413 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 DPY19L2P2Q6ZN68 376 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 RNF165Q6ZSG1 346 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 RFLNAQ6ZTI6 216 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 PAQR9Q6ZVX9 377 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 FRA10AC1Q70Z53 315 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 TRPM8Q7Z2W7 1104 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 BNIPLQ7Z465 357 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 HSD17B13Q7Z5P4 300 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 YRDCQ86U90 279 aaKnown RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 ZNF589Q86UQ0 364 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 PPP1R27Q86WC6 154 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 CNTN4Q8IWV2 1026 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 KLHL7Q8IXQ5 586 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 CLYBLQ8N0X4 340 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 PYROXD2Q8N2H3 581 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 RNF175Q8N4F7 328 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 C20orf203Q8NBC4 194 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 COLGALT1Q8NBJ5 622 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 ZNF540Q8NDQ6 660 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 OR10H4Q8NGA5 316 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 OR52E1Q8NGJ3 308 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 OR2A12Q8NGT7 310 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 OR9A4Q8NGU2 314 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 GDAP1Q8TB36 358 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 DQX1Q8TE96 717 aaKnown RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 TFB1MQ8WVM0 346 aaKnown RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 UBLCP1Q8WVY7 318 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 TAF4BQ92750 862 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 RDH5Q92781 318 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 PSMG2Q969U7 264 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 TMEM45BQ96B21 275 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 RNF185Q96GF1 192 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 C5orf30Q96GV9 206 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 DHTKD1Q96HY7 919 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 TMEM101Q96IK0 257 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 DEFB118Q96PH6 123 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 MBOAT4Q96T53 435 aa0.22□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms