RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 SULF2Q8IWU5 870 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 PSMA8Q8TAA3 256 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 GPR151Q8TDV0 419 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 DIO2Q92813 273 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 PANX1Q96RD7 426 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 BTNL2Q9UIR0 455 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 CBLCQ9ULV8 474 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 A0A0G2JMM0 328 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 A0A1W2PPB8 328 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 A0A1W2PRS3 328 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 ASPDHA6ND91 283 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 TTC36A6NLP5 189 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 KIR3DP1A8MWS1 328 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 NPIPA5E9PKD4 350 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 C19orf84I3L1E1 186 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 HMGN2P05204 90 aaKnown RBP16.33■□□□□ 0.2
CLN3-247ENST00000636351 KRT16P08779 473 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 ACP2P11117 423 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 ZNF24P17028 368 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 NAGAP17050 411 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 AGAP20933 346 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 CHI3L1P36222 383 aaPredicted RBP16.33■□□□□ 0.2
CLN3-247ENST00000636351 RFC3P40938 356 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 ATP4BP51164 291 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 KCNJ2P63252 427 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 IRX1P78414 480 aaPredicted RBP16.33■□□□□ 0.2
CLN3-247ENST00000636351 PLGLB1Q02325 96 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 LRRC74AQ0VAA2 488 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 DECR1Q16698 335 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 KRTCAP3Q53RY4 240 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 ANGPTL8Q6UXH0 198 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 GK5Q6ZS86 529 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 SPPL2CQ8IUH8 684 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 CLEC4FQ8N1N0 589 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 FBXW8Q8N3Y1 598 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 CPSF7Q8N684 471 aaKnown RBP16.33■□□□□ 0.2
CLN3-247ENST00000636351 TRIML2Q8N7C3 387 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 COX18Q8N8Q8 333 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 OR2M7Q8NG81 312 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 OR4N2Q8NGD1 307 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 PAQR8Q8TEZ7 354 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 EFHD2Q96C19 240 aaPredicted RBP16.33■□□□□ 0.2
CLN3-247ENST00000636351 GIMAP5Q96F15 307 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 RMND5BQ96G75 393 aaPredicted RBP16.33■□□□□ 0.2
CLN3-247ENST00000636351 C16orf58Q96GQ5 468 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 SLC35G5Q96KT7 338 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 FRMD6Q96NE9 622 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 CCDC115Q96NT0 180 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 COL21A1Q96P44 957 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 ZNF317Q96PQ6 595 aaPredicted RBP16.33■□□□□ 0.2
CLN3-247ENST00000636351 ADOQ96SZ5 270 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 FAM173AQ9BQD7 235 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 FAM107BQ9H098 131 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 RMND5AQ9H871 391 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 METTL7AQ9H8H3 244 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 CNIH4Q9P003 139 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 CCDC167Q9P0B6 97 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 MRTO4Q9UKD2 239 aaKnown RBP16.33■□□□□ 0.2
CLN3-247ENST00000636351 NPIPA1Q9UND3 350 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 ZNF835Q9Y2P0 537 aa16.33■□□□□ 0.2
CLN3-247ENST00000636351 CHCHD2Q9Y6H1 151 aaPredicted RBP16.33■□□□□ 0.2
CLN3-247ENST00000636351 GXYLT2A0PJZ3 443 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 RFXANKO14593 260 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 ZNHIT1O43257 154 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 HS6ST1O60243 411 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 SCN2BO60939 215 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 ABCB7O75027 752 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 UGT2B11O75310 529 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 KCNH1O95259 989 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 CNR1P21554 472 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 UQCRC2P22695 453 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 PIGAP37287 484 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 DNASE1L1P49184 302 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 MRPL19P49406 292 aaKnown RBP16.32■□□□□ 0.2
CLN3-247ENST00000636351 GNGT1P63211 74 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 MRPS22P82650 360 aaKnown RBP16.32■□□□□ 0.2
CLN3-247ENST00000636351 GAB1Q13480 694 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 EFR3AQ14156 821 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 CYP27C1Q4G0S4 372 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 AGKQ53H12 422 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 C6orf10Q5SRN2 563 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 ZCCHC12Q6PEW1 402 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 Q6ZPB1 254 aaPredicted RBP16.32■□□□□ 0.2
CLN3-247ENST00000636351 NCCRP1Q6ZVX7 275 aaPredicted RBP16.32■□□□□ 0.2
CLN3-247ENST00000636351 ZNF295-AS1Q8N0V1 137 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 POGLUT1Q8NBL1 392 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 SPPL2AQ8TCT8 520 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 PIK3R3Q92569 461 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 VPS33AQ96AX1 596 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 JSRP1Q96MG2 331 aaPredicted RBP16.32■□□□□ 0.2
CLN3-247ENST00000636351 SLC35A5Q9BS91 424 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 INPP5KQ9BT40 448 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 DOHHQ9BU89 302 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 ACTRT3Q9BYD9 372 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 NSRP1Q9H0G5 558 aaKnown RBP16.32■□□□□ 0.2
CLN3-247ENST00000636351 RABEP2Q9H5N1 569 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 DEPPQ9NTK1 212 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 KLHL14Q9P2G3 628 aa16.32■□□□□ 0.2
CLN3-247ENST00000636351 ITGB1BP2Q9UKP3 347 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms