RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 MAPK14Q16539 360 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 SLC25A30Q5SVS4 291 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 C19orf48Q6RUI8 117 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 ATCAYQ86WG3 371 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 GJD3Q8N144 294 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 TMEM80Q96HE8 168 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 FAM46AQ96IP4 442 aaKnown RBP18.91■□□□□ 0.62
CLN3-230ENST00000568076 CCDC3Q9BQI4 270 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 CENPOQ9BU64 300 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 ZNF350Q9GZX5 532 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 SEMA6CQ9H3T2 930 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 ANKRD19PQ9H560 264 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 HMG20AQ9NP66 347 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 FBXO34Q9NWN3 711 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 MAT2BQ9NZL9 334 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 B3GNT3Q9Y2A9 372 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 SPACA6W5XKT8 324 aa18.91■□□□□ 0.62
CLN3-230ENST00000568076 A0A087WV62 115 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 LOC100506127A0A0U1RQW1 187 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 AGAP5A6NIR3 686 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 RDH16O75452 317 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 CKMT1AP12532 417 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 CSTF2P33240 577 aaKnown RBP eCLIP18.9■□□□□ 0.62
CLN3-230ENST00000568076 EEF1A1P68104 462 aaKnown RBP18.9■□□□□ 0.62
CLN3-230ENST00000568076 MAP4K2Q12851 820 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 TSPAN31Q12999 210 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 EXOSC7Q15024 291 aaKnown RBP18.9■□□□□ 0.62
CLN3-230ENST00000568076 NCF4Q15080 339 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 GPR68Q15743 365 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 SSX1Q16384 188 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 TSTQ16762 297 aaKnown RBP18.9■□□□□ 0.62
CLN3-230ENST00000568076 SYT14P1Q58G82 188 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 PLEKHM3Q6ZWE6 761 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 GDF7Q7Z4P5 450 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 PEX5LQ8IYB4 626 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 ZNF687Q8N1G0 1237 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 PIK3R3Q92569 461 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 ANKRD9Q96BM1 317 aaPredicted RBP18.9■□□□□ 0.62
CLN3-230ENST00000568076 OPALINQ96PE5 141 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 TRIM45Q9H8W5 580 aaPredicted RBP18.9■□□□□ 0.62
CLN3-230ENST00000568076 ERGIC3Q9Y282 383 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 TDRD6O60522 2096 aaKnown RBP18.9■□□□□ 0.62
CLN3-230ENST00000568076 IGHV1OR15-9A0A0B4J2B8 117 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 AP3D1O14617 1153 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 SRFP11831 508 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 ZNF136P52737 540 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 SMSP52788 366 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 MAZP56270 477 aaKnown RBP18.9■□□□□ 0.62
CLN3-230ENST00000568076 TUBA1BP68363 451 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 DUSP8Q13202 625 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 ITGADQ13349 1161 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 DCST2Q5T1A1 773 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 DGAT2L6Q6ZPD8 337 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 TUBA1AQ71U36 451 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 SLC41A3Q96GZ6 507 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 LRR1Q96L50 414 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 ZNF582Q96NG8 517 aaPredicted RBP18.9■□□□□ 0.62
CLN3-230ENST00000568076 CHCHD6Q9BRQ6 235 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 TAPBPLQ9BX59 468 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 WDR12Q9GZL7 423 aaKnown RBP18.9■□□□□ 0.62
CLN3-230ENST00000568076 SAP130Q9H0E3 1048 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 SLC2A4RGQ9NR83 387 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 KCNE5Q9UJ90 142 aa18.9■□□□□ 0.62
CLN3-230ENST00000568076 ARHGAP33O14559 1287 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 DSCR3O14972 297 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 CSO75390 466 aaKnown RBP18.89■□□□□ 0.61
CLN3-230ENST00000568076 SULT1C4O75897 302 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 WNT1P04628 370 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 ZNF12P17014 697 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 RPS4Y1P22090 263 aaKnown RBP18.89■□□□□ 0.61
CLN3-230ENST00000568076 BLKP51451 505 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 RHAGQ02094 409 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 DECR1Q16698 335 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 DCDC5Q6ZRR9 648 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 RASSF6Q6ZTQ3 369 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 USP43Q70EL4 1123 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 MRGPREQ86SM8 312 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 RBM12BQ8IXT5 1001 aaKnown RBP18.89■□□□□ 0.61
CLN3-230ENST00000568076 DEFB119Q8N690 84 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 AVL9Q8NBF6 648 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 TSTD1Q8NFU3 115 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 OR9A4Q8NGU2 314 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 TMEM255BQ8WV15 326 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 S100ZQ8WXG8 99 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 ACOT11Q8WXI4 607 aaPredicted RBP18.89■□□□□ 0.61
CLN3-230ENST00000568076 ABTB1Q969K4 478 aaPredicted RBP18.89■□□□□ 0.61
CLN3-230ENST00000568076 ZNF232Q9UNY5 417 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 KNL1Q8NG31 2342 aa18.89■□□□□ 0.61
CLN3-230ENST00000568076 CHURC1-FNTBB4DL54 471 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 PIP5K1CO60331 668 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 OR5F1O95221 314 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 ALOX5P09917 674 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 POU3F3P20264 500 aaPredicted RBP18.88■□□□□ 0.61
CLN3-230ENST00000568076 IFNGR2P38484 337 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 MAP3K8P41279 467 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 RAB38P57729 211 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 LARS2Q15031 903 aaKnown RBP18.88■□□□□ 0.61
CLN3-230ENST00000568076 SNAPC1Q16533 368 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 ARMC6Q6NXE6 501 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 PAQR6Q6TCH4 344 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms