RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 OR1J4Q8NGS1 313 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 OR9A2Q8NGT5 310 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 FAM57AQ8TBR7 257 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 CTHRC1Q96CG8 243 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 C11orf24Q96F05 449 aaPredicted RBP7.97□□□□□ -1.13
USP3-208ENST00000558285 TMEM41AQ96HV5 264 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 MPP4Q96JB8 637 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 ZNF681Q96N22 645 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 COL21A1Q96P44 957 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 BTBD9Q96Q07 612 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 ARPC5LQ9BPX5 153 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 BTBD10Q9BSF8 475 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 TSPAN10Q9H1Z9 355 aaPredicted RBP7.97□□□□□ -1.13
USP3-208ENST00000558285 NEUROD4Q9HD90 331 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 ZNF639Q9UID6 485 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 TRIM33Q9UPN9 1127 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 ZNF835Q9Y2P0 537 aa7.97□□□□□ -1.13
USP3-208ENST00000558285 KLF2Q9Y5W3 355 aaPredicted RBP7.97□□□□□ -1.13
USP3-208ENST00000558285 ATP6AP2A0A1C7CYW4 349 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 WIPF3A6NGB9 483 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 WASHC1A8K0Z3 465 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 FAM166BA8MTA8 275 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 E9PBE3 544 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 PIP5K1BO14986 540 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 SEMA7AO75326 666 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 FKBP6O75344 327 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 ATP6AP2O75787 350 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 ZIC2O95409 532 aaPredicted RBP7.96□□□□□ -1.14
USP3-208ENST00000558285 JUNP05412 331 aaKnown RBP7.96□□□□□ -1.14
USP3-208ENST00000558285 CCL3P10147 92 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 HPGDP15428 266 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 ENDOUP21128 410 aaKnown RBP7.96□□□□□ -1.14
USP3-208ENST00000558285 LCN1P31025 176 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 PNLIPRP2P54317 469 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 LRRC74AQ0VAA2 488 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 KRT72Q14CN4 511 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 DPY19L1Q2PZI1 675 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 TRMT5Q32P41 509 aaKnown RBP7.96□□□□□ -1.14
USP3-208ENST00000558285 SPDYE7PQ495Y7 208 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 CPTPQ5TA50 214 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 AAGABQ6PD74 315 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 SZRD1Q7Z422 152 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 ZNF227Q86WZ6 799 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 CDRT4Q8N9R6 151 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 OR10G3Q8NGC4 313 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 AGR3Q8TD06 166 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 ADIPOR1Q96A54 375 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 OMA1Q96E52 524 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 RILPQ96NA2 401 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 MS4A4EQ96PG1 132 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 PSMG3-AS1Q96PY0 264 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 ZBTB18Q99592 522 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 ECSITQ9BQ95 431 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 SIKE1Q9BRV8 207 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 OSBPL11Q9BXB4 747 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 ITPAQ9BY32 194 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 ANGPTL4Q9BY76 406 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 PTGES2Q9H7Z7 377 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 ZDHHC11Q9H8X9 412 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 ACKR4Q9NPB9 350 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 HEY2Q9UBP5 337 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 SH3BGRL2Q9UJC5 107 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 HAO1Q9UJM8 370 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 ABCG2Q9UNQ0 655 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 C19orf53Q9UNZ5 99 aaPredicted RBP7.96□□□□□ -1.14
USP3-208ENST00000558285 GPR55Q9Y2T6 319 aaPredicted RBP7.96□□□□□ -1.14
USP3-208ENST00000558285 MEMO1Q9Y316 297 aa7.96□□□□□ -1.14
USP3-208ENST00000558285 A0A1B0GTH9 108 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 WDR91A4D1P6 747 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 PRAMEF25A6NGN4 478 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 FOXO6A8MYZ6 492 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 H0Y3Z8 333 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 HRKO00198 91 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 LSM1O15116 133 aaKnown RBP7.95□□□□□ -1.14
USP3-208ENST00000558285 ENTPD5O75356 428 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 CBR3O75828 277 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 TRAPPC6AO75865 159 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 GLSO94925 669 aaPredicted RBP7.95□□□□□ -1.14
USP3-208ENST00000558285 NADKO95544 446 aaPredicted RBP7.95□□□□□ -1.14
USP3-208ENST00000558285 IGHG3P01860 377 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 CHRNGP07510 517 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 T-ENOLP0DO92 83 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 RPL5P46777 297 aaKnown RBP7.95□□□□□ -1.14
USP3-208ENST00000558285 SLC1A6P48664 564 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 DNASE1L1P49184 302 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 ANXA11P50995 505 aaKnown RBP7.95□□□□□ -1.14
USP3-208ENST00000558285 EXOSC7Q15024 291 aaKnown RBP7.95□□□□□ -1.14
USP3-208ENST00000558285 MLC1Q15049 377 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 TRMT12Q53H54 448 aaKnown RBP7.95□□□□□ -1.14
USP3-208ENST00000558285 ANXA8L1Q5VT79 327 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 PRAMEF20Q5VT98 475 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 CGB2Q6NT52 195 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 DHRS4L2Q6PKH6 230 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 FAM111BQ6SJ93 734 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 ENPP6Q6UWR7 440 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 Q6ZNX1 250 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 C16orf47Q6ZP98 133 aaPredicted RBP7.95□□□□□ -1.14
USP3-208ENST00000558285 DGAT2L6Q6ZPD8 337 aa7.95□□□□□ -1.14
USP3-208ENST00000558285 LARP4Q71RC2 724 aaKnown RBP eCLIP7.95□□□□□ -1.14
USP3-208ENST00000558285 NET1Q7Z628 596 aaPredicted RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms