RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 MFSD12Q6NUT3 480 aa11.42□□□□□ -0.58
SLIRP-209ENST00000557342 WDR53Q7Z5U6 358 aaPredicted RBP11.42□□□□□ -0.58
SLIRP-209ENST00000557342 CHERPQ8IWX8 916 aaKnown RBP11.42□□□□□ -0.58
SLIRP-209ENST00000557342 GLB1L3Q8NCI6 653 aaPredicted RBP11.42□□□□□ -0.58
SLIRP-209ENST00000557342 NUDT8Q8WV74 236 aa11.42□□□□□ -0.58
SLIRP-209ENST00000557342 CKAP2Q8WWK9 683 aa11.42□□□□□ -0.58
SLIRP-209ENST00000557342 SARAFQ96BY9 339 aa11.42□□□□□ -0.58
SLIRP-209ENST00000557342 STACQ99469 402 aa11.42□□□□□ -0.58
SLIRP-209ENST00000557342 ACTRT3Q9BYD9 372 aa11.42□□□□□ -0.58
SLIRP-209ENST00000557342 CXorf36Q9H7Y0 433 aa11.42□□□□□ -0.58
SLIRP-209ENST00000557342 HHATLQ9HCP6 504 aa11.42□□□□□ -0.58
SLIRP-209ENST00000557342 MED4Q9NPJ6 270 aa11.42□□□□□ -0.58
SLIRP-209ENST00000557342 SDHAF3Q9NRP4 125 aa11.42□□□□□ -0.58
SLIRP-209ENST00000557342 DUSP22Q9NRW4 184 aa11.42□□□□□ -0.58
SLIRP-209ENST00000557342 FAM120CQ9NX05 1096 aaKnown RBP11.42□□□□□ -0.58
SLIRP-209ENST00000557342 SH3BGRL2Q9UJC5 107 aa11.42□□□□□ -0.58
SLIRP-209ENST00000557342 FAF1Q9UNN5 650 aaPredicted RBP11.42□□□□□ -0.58
SLIRP-209ENST00000557342 ABCG2Q9UNQ0 655 aa11.42□□□□□ -0.58
SLIRP-209ENST00000557342 C15orf41Q9Y2V0 281 aa11.42□□□□□ -0.58
SLIRP-209ENST00000557342 WIF1Q9Y5W5 379 aa11.42□□□□□ -0.58
SLIRP-209ENST00000557342 GPR45Q9Y5Y3 372 aa11.42□□□□□ -0.58
SLIRP-209ENST00000557342 TENM4Q6N022 2769 aa11.42□□□□□ -0.58
SLIRP-209ENST00000557342 PRRC2CQ9Y520 2896 aaKnown RBP11.42□□□□□ -0.58
SLIRP-209ENST00000557342 RELNP78509 3460 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 ARHGAP21Q5T5U3 1957 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 SETXQ7Z333 2677 aaKnown RBP11.41□□□□□ -0.58
SLIRP-209ENST00000557342 CBR3O75828 277 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 TRAPPC6AO75865 159 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 HPNP05981 417 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 CELA3AP09093 270 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 ACP2P11117 423 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 PTPN6P29350 595 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 LCN1P31025 176 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 EVI2BP34910 448 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 SOAT1P35610 550 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 RFX3P48380 749 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 WNT3P56703 355 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 UFM1P61960 85 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 TP53BP2Q13625 1128 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 LASP1Q14847 261 aaKnown RBP11.41□□□□□ -0.58
SLIRP-209ENST00000557342 TOMM20Q15388 145 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 DUSP5Q16690 384 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 PDCD4Q53EL6 469 aaKnown RBP11.41□□□□□ -0.58
SLIRP-209ENST00000557342 HSP90B2PQ58FF3 399 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 SPANXN4Q5MJ08 99 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 FNDC7Q5VTL7 733 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 CDC73Q6P1J9 531 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 EPGNQ6UW88 154 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 MAVSQ7Z434 540 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 FGD2Q7Z6J4 655 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 CD163Q86VB7 1156 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 DOLPP1Q86YN1 238 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 ARFGAP2Q8N6H7 521 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 COX18Q8N8Q8 333 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 SLC16A11Q8NCK7 471 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 OR4A15Q8NGL6 344 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 ADAMTS15Q8TE58 950 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 RNF138Q8WVD3 245 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 PIK3R3Q92569 461 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 JADE3Q92613 823 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 CHMP6Q96FZ7 201 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 RMND5BQ96G75 393 aaPredicted RBP11.41□□□□□ -0.58
SLIRP-209ENST00000557342 GNRHR2Q96P88 292 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 G6PC3Q9BUM1 346 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 UBQLN3Q9H347 655 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 TP63Q9H3D4 680 aaPredicted RBP11.41□□□□□ -0.58
SLIRP-209ENST00000557342 PIGUQ9H490 435 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 GALNT9Q9HCQ5 603 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 SLCO1B3Q9NPD5 702 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 TINAGQ9UJW2 476 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 PCDHGB3Q9Y5G1 929 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 LIPGQ9Y5X9 500 aa11.41□□□□□ -0.58
SLIRP-209ENST00000557342 DIDO1Q9BTC0 2240 aaKnown RBP11.4□□□□□ -0.58
SLIRP-209ENST00000557342 GXYLT2A0PJZ3 443 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 DUXAA6NLW8 204 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 NPIPA2E9PIF3 369 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 E9PLN8 166 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 NPIPA3F8WFD2 350 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 UBDO15205 165 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 POLR3GO15318 223 aaPredicted RBP11.4□□□□□ -0.58
SLIRP-209ENST00000557342 GCKP35557 465 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 NME5P56597 212 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 POU6F2P78424 691 aaPredicted RBP11.4□□□□□ -0.58
SLIRP-209ENST00000557342 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.4□□□□□ -0.58
SLIRP-209ENST00000557342 FAM174BQ3ZCQ3 159 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 EXOSC6Q5RKV6 272 aaKnown RBP11.4□□□□□ -0.58
SLIRP-209ENST00000557342 WLSQ5T9L3 541 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 RPTNQ6XPR3 784 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 PLCZ1Q86YW0 608 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 CLECL1Q8IZS7 167 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 NEIL3Q8TAT5 605 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 FBXO30Q8TB52 745 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 FAM110BQ8TC76 370 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 PHF10Q8WUB8 498 aaKnown RBP11.4□□□□□ -0.58
SLIRP-209ENST00000557342 C16orf58Q96GQ5 468 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 PSMG3-AS1Q96PY0 264 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 OR52B2Q96RD2 323 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 VKORC1Q9BQB6 163 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 YIPF4Q9BSR8 244 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 CCDC28BQ9BUN5 200 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms