RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 ATP6V1E1P36543 226 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 RPS5P46782 204 aaKnown RBP14.8□□□□□ -0.04
LDLR-204ENST00000545707 HTRA4P83105 476 aaPredicted RBP14.8□□□□□ -0.04
LDLR-204ENST00000545707 TGM3Q08188 693 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 ZNF155Q12901 538 aaPredicted RBP14.8□□□□□ -0.04
LDLR-204ENST00000545707 IL18Q14116 193 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 FAM78AQ5JUQ0 283 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 TMEM255BQ8WV15 326 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 RNF170Q96K19 258 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 ENTPD4Q9Y227 616 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.8□□□□□ -0.04
LDLR-204ENST00000545707 KDM4EB2RXH2 506 aaPredicted RBP14.8□□□□□ -0.04
LDLR-204ENST00000545707 VEGFBP49765 207 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 RAB28P51157 221 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 PDX1P52945 283 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 TRAM2Q15035 370 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 SNAP47Q5SQN1 464 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 PPP2R2DQ66LE6 453 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 ZNF438Q7Z4V0 828 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 KLBQ86Z14 1044 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 LINC00471Q8N535 108 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 GALNT6Q8NCL4 622 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 SPRYD4Q8WW59 207 aaPredicted RBP14.8□□□□□ -0.04
LDLR-204ENST00000545707 NACC2Q96BF6 587 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 ZNF764Q96H86 408 aaPredicted RBP14.8□□□□□ -0.04
LDLR-204ENST00000545707 ATF6BQ99941 703 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 NLKQ9UBE8 527 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 APOBEC3BQ9UH17 382 aaKnown RBP14.8□□□□□ -0.04
LDLR-204ENST00000545707 CES1P1Q9UKY3 287 aa14.8□□□□□ -0.04
LDLR-204ENST00000545707 EXOSC1Q9Y3B2 195 aaKnown RBP14.8□□□□□ -0.04
LDLR-204ENST00000545707 PTPRSQ13332 1948 aa14.79□□□□□ -0.04
LDLR-204ENST00000545707 SCN3AQ9NY46 2000 aa14.79□□□□□ -0.04
LDLR-204ENST00000545707 C1QTNF3-AMACRE9PGA6 284 aa14.79□□□□□ -0.04
LDLR-204ENST00000545707 CDC42EP2O14613 210 aa14.79□□□□□ -0.04
LDLR-204ENST00000545707 CASC3O15234 703 aaKnown RBP14.79□□□□□ -0.04
LDLR-204ENST00000545707 CTBP2P56545 445 aa14.79□□□□□ -0.04
LDLR-204ENST00000545707 TRA2BP62995 288 aaKnown RBP14.79□□□□□ -0.04
LDLR-204ENST00000545707 ZIC1Q15915 447 aa14.79□□□□□ -0.04
LDLR-204ENST00000545707 LCN1P1Q5VSP4 162 aa14.79□□□□□ -0.04
LDLR-204ENST00000545707 RASSF6Q6ZTQ3 369 aa14.79□□□□□ -0.04
LDLR-204ENST00000545707 SLC16A11Q8NCK7 471 aa14.79□□□□□ -0.04
LDLR-204ENST00000545707 OR52E1Q8NGJ3 308 aa14.79□□□□□ -0.04
LDLR-204ENST00000545707 NEIL3Q8TAT5 605 aa14.79□□□□□ -0.04
LDLR-204ENST00000545707 ELP4Q96EB1 424 aa14.79□□□□□ -0.04
LDLR-204ENST00000545707 SECISBP2Q96T21 854 aaKnown RBP14.79□□□□□ -0.04
LDLR-204ENST00000545707 TBX5Q99593 518 aa14.79□□□□□ -0.04
LDLR-204ENST00000545707 MED18Q9BUE0 208 aa14.79□□□□□ -0.04
LDLR-204ENST00000545707 WDR26Q9H7D7 661 aa14.79□□□□□ -0.04
LDLR-204ENST00000545707 PPP1R3EQ9H7J1 279 aa14.79□□□□□ -0.04
LDLR-204ENST00000545707 MED20Q9H944 212 aa14.79□□□□□ -0.04
LDLR-204ENST00000545707 ISG20L2Q9H9L3 353 aaKnown RBP14.79□□□□□ -0.04
LDLR-204ENST00000545707 SZT2Q5T011 3432 aa14.79□□□□□ -0.04
LDLR-204ENST00000545707 GABRPO00591 440 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 SURF4O15260 269 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 F3P13726 295 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 CSNK2A2P19784 350 aaPredicted RBP14.78□□□□□ -0.04
LDLR-204ENST00000545707 STXBP1P61764 594 aaKnown RBP14.78□□□□□ -0.04
LDLR-204ENST00000545707 FGL2Q14314 439 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 QPRTQ15274 297 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 AADACL4Q5VUY2 407 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 TRIQKQ629K1 86 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 MRM1Q6IN84 353 aaKnown RBP14.78□□□□□ -0.04
LDLR-204ENST00000545707 SLC48A1Q6P1K1 146 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 C16orf62Q7Z3J2 963 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 MRGPREQ86SM8 312 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 NOXA1Q86UR1 476 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 SHISA5Q8N114 240 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 ZNF513Q8N8E2 541 aaPredicted RBP14.78□□□□□ -0.04
LDLR-204ENST00000545707 KCT2Q8NC54 265 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 C19orf18Q8NEA5 215 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 PIGXQ8TBF5 258 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 SLC35A4Q96G79 324 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 GDF15Q99988 308 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 ZNF649Q9BS31 505 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 CENPVL1A0A0U1RR11 272 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 A0A1B0GVC2 190 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 OR6C70A6NIJ9 312 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 A6NIN4 97 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 SNTNA6NMZ2 147 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 EMC8O43402 210 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 EFCAB14O75071 495 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 SNRNP200O75643 2136 aaKnown RBP14.78□□□□□ -0.04
LDLR-204ENST00000545707 PEBP1P30086 187 aaKnown RBP14.78□□□□□ -0.04
LDLR-204ENST00000545707 FGF9P31371 208 aaPredicted RBP14.78□□□□□ -0.04
LDLR-204ENST00000545707 AHRP35869 848 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 RAB25P57735 213 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 RGS8P57771 180 aaPredicted RBP14.78□□□□□ -0.04
LDLR-204ENST00000545707 ST3GAL3Q11203 375 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 IRF4Q15306 451 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 TATDN3Q17R31 274 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 VASNQ6EMK4 673 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 BHLHB9Q6PI77 547 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 CD200R1LQ6Q8B3 271 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 TMEM64Q6YI46 380 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 PLEKHM3Q6ZWE6 761 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 CPOQ8IVL8 374 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 OR4N5Q8IXE1 308 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 ARIH2OSQ8N7S6 290 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 OR56A1Q8NGH5 318 aa14.78□□□□□ -0.04
LDLR-204ENST00000545707 OR51G2Q8NGK0 314 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms