RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	HSDL2	Q6YN16	418 aa		11.74	□□□□□ -0.53
RNF4-222	ENST00000541204	ZNF438	Q7Z4V0	828 aa		11.74	□□□□□ -0.53
RNF4-222	ENST00000541204	MORN4	Q8NDC4	146 aa		11.74	□□□□□ -0.53
RNF4-222	ENST00000541204	FGF11	Q92914	225 aa		11.74	□□□□□ -0.53
RNF4-222	ENST00000541204	SIPA1	Q96FS4	1042 aa		11.74	□□□□□ -0.53
RNF4-222	ENST00000541204	SLC35G5	Q96KT7	338 aa		11.74	□□□□□ -0.53
RNF4-222	ENST00000541204	QRFPR	Q96P65	431 aa		11.74	□□□□□ -0.53
RNF4-222	ENST00000541204	CLDND1	Q9NY35	253 aa		11.74	□□□□□ -0.53
RNF4-222	ENST00000541204	GON4L	Q3T8J9	2241 aa		11.74	□□□□□ -0.53
RNF4-222	ENST00000541204	CENPBD1	B2RD01	187 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	CERS1	P27544	350 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	ACSL1	P33121	698 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	BUD31	P41223	144 aa	Predicted RBP	11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	MAP4K2	Q12851	820 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	GPR19	Q15760	415 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	KLHL22	Q53GT1	634 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	C3orf38	Q5JPI3	329 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	SLC25A30	Q5SVS4	291 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	C18orf63	Q68DL7	685 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	CD300LD	Q6UXZ3	194 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	CCDC116	Q8IYX3	515 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	OR2L3	Q8NG85	312 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	ENKUR	Q8TC29	256 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	TIMM29	Q9BSF4	260 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	PRRG3	Q9BZD7	231 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	QRSL1	Q9H0R6	528 aa	Known RBP	11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	ATG4B	Q9Y4P1	393 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	PRSS38	A1L453	326 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	STK25	O00506	426 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	SLC30A4	O14863	429 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	NTN1	O95631	604 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	ALPP	P05187	535 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	ACP2	P11117	423 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	CTH	P32929	405 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	SOX18	P35713	384 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	SMS	P52788	366 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	ZNF628	Q5EBL2	1059 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	C1orf94	Q6P1W5	598 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	ZNF730	Q6ZMV8	503 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	SIMC1	Q8NDZ2	872 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	OR2L8	Q8NGY9	312 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	LCN9	Q8WX39	176 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	OR1E3	Q8WZA6	343 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	BBS4	Q96RK4	519 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	LMAN2L	Q9H0V9	348 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	GLIPR2	Q9H4G4	154 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	ZCCHC3	Q9NUD5	404 aa	Known RBP	11.73	□□□□□ -0.53
RNF4-222	ENST00000541204		A0A0A6YYD5	115 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	GPR89A	B7ZAQ6	455 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	BTN3A3	O00478	584 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	CASK	O14936	926 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	SEC14L5	O43304	696 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	TBX19	O60806	448 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	YES1	P07947	543 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	GPR89B	P0CG08	455 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	ACADM	P11310	421 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	PPP2R1B	P30154	601 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	TNFRSF4	P43489	277 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	MAN2A2	P49641	1150 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	SNRPN	P63162	240 aa	Known RBP	11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	MLLT1	Q03111	559 aa	Predicted RBP	11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	SLC9A5	Q14940	896 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	AGER	Q15109	404 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	CLEC12A	Q5QGZ9	265 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	QSOX2	Q6ZRP7	698 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	LHFPL3	Q86UP9	236 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	NATD1	Q8N6N6	113 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	UFD1	Q92890	307 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	DCLRE1C	Q96SD1	692 aa	Known RBP	11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	SAP130	Q9H0E3	1048 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	DDX31	Q9H8H2	851 aa	Known RBP	11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	EQTN	Q9NQ60	294 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	SLC9A8	Q9Y2E8	581 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	MAU2	Q9Y6X3	613 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204	SPEG	Q15772	3267 aa		11.73	□□□□□ -0.53
RNF4-222	ENST00000541204		A0A1W2PR48	441 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	PRODH	O43272	600 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	HPGDS	O60760	199 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	NCR1	O76036	304 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	CHRM4	P08173	479 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	SLC2A2	P11168	524 aa	Predicted RBP	11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	ACTR1B	P42025	376 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	MTNR1A	P48039	350 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	ACTR1A	P61163	376 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	DUSP2	Q05923	314 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	RAB40B	Q12829	278 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	QPRT	Q15274	297 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	P2RY14	Q15391	338 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	NDUFA9	Q16795	377 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	ACOT4	Q8N9L9	421 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	KCT2	Q8NC54	265 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	TMEM163	Q8TC26	289 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	AP3S1	Q92572	193 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	MS4A6E	Q96DS6	147 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	AMDHD1	Q96NU7	426 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	MED18	Q9BUE0	208 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	C1QTNF7	Q9BXJ2	289 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	TMEM168	Q9H0V1	697 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	CNIH4	Q9P003	139 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	11.72	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms