RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 FBXO25Q8TCJ0 367 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 NEK7Q8TDX7 302 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 HTRA1Q92743 480 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 KAT2AQ92830 837 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 MALSU1Q96EH3 234 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 SIPA1Q96FS4 1042 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 PRMT6Q96LA8 375 aaPredicted RBP5.17□□□□□ -1.58
CD44-236ENST00000533222 COL21A1Q96P44 957 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 KCNA7Q96RP8 456 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 TRMOQ9BU70 441 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 CRB3Q9BUF7 120 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 TEX12Q9BXU0 123 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 NKX6-2Q9C056 277 aaPredicted RBP5.17□□□□□ -1.58
CD44-236ENST00000533222 NUAK2Q9H093 628 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 COMMD4Q9H0A8 199 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 KRCC1Q9NPI7 259 aaPredicted RBP5.17□□□□□ -1.58
CD44-236ENST00000533222 XPNPEP3Q9NQH7 507 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 MRPS18AQ9NVS2 196 aaKnown RBP5.17□□□□□ -1.58
CD44-236ENST00000533222 PNPOQ9NVS9 261 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 DUS2Q9NX74 493 aaKnown RBP5.17□□□□□ -1.58
CD44-236ENST00000533222 TBC1D29Q9UFV1 150 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 CAMK2AQ9UQM7 478 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 STARD10Q9Y365 291 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 ATG4BQ9Y4P1 393 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 HSPB11Q9Y547 144 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 AKAP11Q9UKA4 1901 aa5.17□□□□□ -1.58
CD44-236ENST00000533222 DICER1Q9UPY3 1922 aaKnown RBP5.17□□□□□ -1.58
CD44-236ENST00000533222 ZCCHC11Q5TAX3 1644 aaKnown RBP5.16□□□□□ -1.58
CD44-236ENST00000533222 MAP3K4Q9Y6R4 1608 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 A0A0U1RQK1 487 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 TRBC2A0A5B9 178 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 ZNF320A2RRD8 509 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 E7ENX8 843 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 IMPA2O14732 288 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 CDIPTO14735 213 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 MRASO14807 208 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 UBDO15205 165 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 CFLARO15519 480 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 WDR47O94967 919 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 AGFG2O95081 481 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 GADD45GO95257 159 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 MATN4O95460 622 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 GH1P01241 217 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 OR56A5P0C7T3 313 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 FCER1AP12319 257 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 PVALBP20472 110 aaPredicted RBP5.16□□□□□ -1.58
CD44-236ENST00000533222 MSR1P21757 451 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 BCKDHBP21953 392 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 STOMP27105 288 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 AKT1P31749 480 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 CXCR5P32302 372 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 GRIA3P42263 894 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 GCLMP48507 274 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 NRIP1P48552 1158 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 ZNF41P51814 821 aaPredicted RBP5.16□□□□□ -1.58
CD44-236ENST00000533222 KPNA2P52292 529 aaKnown RBP5.16□□□□□ -1.58
CD44-236ENST00000533222 DGKEP52429 567 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 PLA2G16P53816 162 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 ARL4CP56559 192 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 IRF8Q02556 426 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 CBFBQ13951 182 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 SLC17A1Q14916 467 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 QPRTQ15274 297 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 TAF1AQ15573 450 aaPredicted RBP5.16□□□□□ -1.58
CD44-236ENST00000533222 MPPED2Q15777 294 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 TATDN3Q17R31 274 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 LRRC26Q2I0M4 334 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 C14orf28Q4W4Y0 310 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 TTC23Q5W5X9 447 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 ACSM5Q6NUN0 579 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 TCF24Q7RTU0 167 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 IRF2BP2Q7Z5L9 587 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 CCDC190Q86UF4 302 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 LRRC28Q86X40 367 aaPredicted RBP5.16□□□□□ -1.58
CD44-236ENST00000533222 COMMD1Q8N668 190 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 ACBD7Q8N6N7 88 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 YIPF7Q8N8F6 280 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 NECAB1Q8N987 351 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 FAM47BQ8NA70 645 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 ANKRD52Q8NB46 1076 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 Q8NFD4 153 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 OR56A1Q8NGH5 318 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 OR9A2Q8NGT5 310 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 KCNE4Q8WWG9 221 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 OIT3Q8WWZ8 545 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 ASB13Q8WXK3 278 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 FCGR1BQ92637 280 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 RSC1A1Q92681 617 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 RIT1Q92963 219 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 EXT2Q93063 718 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 POP5Q969H6 163 aaKnown RBP5.16□□□□□ -1.58
CD44-236ENST00000533222 SMIM12Q96EX1 92 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 MED8Q96G25 268 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 C5orf34Q96MH7 638 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 LINC00052Q96N35 136 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 WDFY2Q96P53 400 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 ZNF300Q96RE9 604 aaPredicted RBP5.16□□□□□ -1.58
CD44-236ENST00000533222 CSF3RQ99062 836 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 IL12RB2Q99665 862 aa5.16□□□□□ -1.58
CD44-236ENST00000533222 WDR77Q9BQA1 342 aaPredicted RBP5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms