RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 SAXO2Q658L1 398 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 CGB2Q6NT52 195 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 PIK3R3Q92569 461 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 VPS33AQ96AX1 596 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 EFHD2Q96C19 240 aaPredicted RBP13.08□□□□□ -0.32
NUP54-216ENST00000514901 NTNG2Q96CW9 530 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 SPDL1Q96EA4 605 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 DTNBP1Q96EV8 351 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 RMND5BQ96G75 393 aaPredicted RBP13.08□□□□□ -0.32
NUP54-216ENST00000514901 TMEM41AQ96HV5 264 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 SLC35G5Q96KT7 338 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 ZNF597Q96LX8 424 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 PHF12Q96QT6 1004 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 NODALQ96S42 347 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 SLC35A5Q9BS91 424 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 INPP5KQ9BT40 448 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 TTTY12Q9BZ98 90 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 NSRP1Q9H0G5 558 aaKnown RBP13.08□□□□□ -0.32
NUP54-216ENST00000514901 ZNF385DQ9H6B1 395 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 SERHLQ9NQF3 203 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 TUBA8Q9NY65 449 aaPredicted RBP13.08□□□□□ -0.32
NUP54-216ENST00000514901 KLRF1Q9NZS2 232 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 B4GALT7Q9UBV7 327 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 ABCG2Q9UNQ0 655 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 EXPH5Q8NEV8 1989 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 DNAJC13O75165 2243 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 A0A0G2JMM0 328 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 A0A1W2PPB8 328 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 A0A1W2PRS3 328 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 GMNCA6NCL1 334 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 ANKUB1A6NFN9 424 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 PRAMEF25A6NGN4 478 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 KIR3DP1A8MWS1 328 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 NPIPA5E9PKD4 350 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 G3V3Y1 287 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 ASNA1O43681 348 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 ICOSLGO75144 302 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 KCNK2O95069 426 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 CBX6O95503 412 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 ANP32DO95626 131 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 CYP4B1P13584 511 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 ELAVL4P26378 380 aaKnown RBP13.07□□□□□ -0.32
NUP54-216ENST00000514901 MST1P26927 711 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 ADSLP30566 484 aaPredicted RBP13.07□□□□□ -0.32
NUP54-216ENST00000514901 LSP1P33241 339 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 MASP1P48740 699 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 RNFT1Q5M7Z0 435 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 ATAD3BQ5T9A4 648 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 SIAH3Q8IW03 269 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 FBXO30Q8TB52 745 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 RNF138Q8WVD3 245 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 GTF2H4Q92759 462 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 GPR137Q96N19 417 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 OR7D2Q96RA2 312 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 OSBPL11Q9BXB4 747 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 HOXD1Q9GZZ0 328 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 SDHAF3Q9NRP4 125 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 EXD2Q9NVH0 621 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 QPCTLQ9NXS2 382 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 SEC14L3Q9UDX4 400 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 NPIPA1Q9UND3 350 aa13.07□□□□□ -0.32
NUP54-216ENST00000514901 SPENQ96T58 3664 aaKnown RBP13.07□□□□□ -0.32
NUP54-216ENST00000514901 GTF3C1Q12789 2109 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 A0A1W2PP18 115 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 PINLYPA6NC86 204 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 NR5A2O00482 541 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 NGFRP08138 427 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 ATP6V1C1P21283 382 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 EVI2BP34910 448 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 CDKN2CP42773 168 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 KHKP50053 298 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 TDGF1P3P51864 188 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 RBPJQ06330 500 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 SLC10A1Q14973 349 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.06□□□□□ -0.32
NUP54-216ENST00000514901 C6orf10Q5SRN2 563 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 BICRALQ6AI39 1079 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 TIGD3Q6B0B8 471 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 GFRALQ6UXV0 394 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 CLEC4FQ8N1N0 589 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 FAM109AQ8N4B1 249 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 C10orf82Q8WW14 230 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 CDS1Q92903 461 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 JSRP1Q96MG2 331 aaPredicted RBP13.06□□□□□ -0.32
NUP54-216ENST00000514901 ZDHHC11Q9H8X9 412 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 UBQLN4Q9NRR5 601 aa13.06□□□□□ -0.32
NUP54-216ENST00000514901 ZNF407Q9C0G0 2248 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 A0A096LPI6 279 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 SNPHO15079 494 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 SLC22A2O15244 555 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 FADS1O60427 444 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 WISP1O95388 367 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 UTS2O95399 124 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 IGKV1D-16P01601 117 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 GSNP06396 782 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 GUSBP08236 651 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 SNRPB2P08579 225 aaKnown RBP13.05□□□□□ -0.32
NUP54-216ENST00000514901 TBXA2RP21731 343 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 RFC3P40938 356 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 PTGDSP41222 190 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms