RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 FGF9P31371 208 aaPredicted RBP11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 OR10A3P58181 314 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 DHODHQ02127 395 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 TEX30Q5JUR7 227 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 LDLRAD1Q5T700 205 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 CPNE4Q96A23 557 aaPredicted RBP11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 AP5M1Q9H0R1 490 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 SLC38A1Q9H2H9 487 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 KLHL31Q9H511 634 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 TMEM185BQ9H7F4 350 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 ASF1AQ9Y294 204 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 MYLKQ15746 1914 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 IQCF5A8MTL0 148 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 MATN3O15232 486 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 OR10H3O60404 316 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 RAD1O60671 282 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 MAFKO60675 156 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 THP07101 528 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 NOS3P29474 1203 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 SPAM1P38567 509 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 CRATP43155 626 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 IL2P60568 153 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 SMAD4Q13485 552 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 TGIF1Q15583 401 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 OR52W1Q6IF63 320 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 C11orf88Q6PI97 169 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 SEZ6L2Q6UXD5 910 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 ASPGQ86U10 573 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 SLC43A2Q8N370 569 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 AVL9Q8NBF6 648 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 SCLYQ96I15 445 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 APOLD1Q96LR9 279 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 PBX4Q9BYU1 374 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 PIGMQ9H3S5 423 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 NPDC1Q9NQX5 325 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 CA14Q9ULX7 337 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 YJEFN3A6XGL0 299 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 GABRDO14764 452 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 PRKYO43930 277 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 HMBSP08397 361 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 NME1P15531 152 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 RBMS1P29558 406 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 BDKRB2P30411 391 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 SRSF3P84103 164 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 SORDQ00796 357 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 MAP4K2Q12851 820 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 BOP1Q14137 746 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 ATXN7L2Q5T6C5 722 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 FAAP20Q6NZ36 180 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 NKAPQ8N5F7 415 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 OR11G2Q8NGC1 345 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 OR8J1Q8NGP2 316 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 TRAPPC12Q8WVT3 735 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 MRPS31Q92665 395 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 NAA11Q9BSU3 229 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 EDEM2Q9BV94 578 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 COLEC11Q9BWP8 271 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 C1QTNF3Q9BXJ4 246 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 AUNIPQ9H7T9 357 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 FZD3Q9NPG1 666 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 RCE1Q9Y256 329 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 PTCH2Q9Y6C5 1203 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 PRAMEF25A6NGN4 478 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 OR6C76A6NM76 312 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 ANHXE9PGG2 379 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 CREBL2O60519 120 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 PEX10O60683 326 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 LILRB5O75023 590 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 GPX2P18283 190 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 PSMB1P20618 241 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 RFX3P48380 749 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 CDKN1CP49918 316 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 LUMP51884 338 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 GMFBP60983 142 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 MAT1AQ00266 395 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 FAM27D1Q5T7N8 215 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 SKA3Q8IX90 412 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 NAGSQ8N159 534 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 CRYBG2Q8N1P7 616 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 MARS2Q96GW9 593 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 TOLLIPQ9H0E2 274 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 RASL12Q9NYN1 266 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 MED16Q9Y2X0 877 aa11.34□□□□□ -0.59
LIMCH1-213ENST00000511496 TRBV23OR9-2A0A075B6M9 112 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 COLCA2A8K830 154 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 SLC34A2O95436 690 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 CD2P06729 351 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 SHC1P29353 583 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 RBP2P50120 134 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 SNRPGP62308 76 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 ZNF791Q3KP31 576 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 SIRPB2Q5JXA9 342 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 ARMC10Q8N2F6 343 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 HUS1BQ8NHY5 278 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 ZNF75AQ96N20 296 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 CXCL16Q9H2A7 254 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 TMPRSS5Q9H3S3 457 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 PPP4R1LQ9P1A2 415 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 UXTQ9UBK9 157 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 GPR52Q9Y2T5 361 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms