RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 SYNGR4O95473 234 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 SEMG1P04279 462 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 FERP16591 822 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 USP6P35125 1406 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 NSFP46459 744 aaKnown RBP1.87□□□□□ -2.11
VPS50-216ENST00000484954 LIM2P55344 173 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 UBXN1Q04323 297 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 ELAVL3Q14576 367 aaKnown RBP1.87□□□□□ -2.11
VPS50-216ENST00000484954 MPPED2Q15777 294 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 FUT11Q495W5 492 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 ZNF691Q5VV52 312 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 CWC27Q6UX04 472 aaKnown RBP1.87□□□□□ -2.11
VPS50-216ENST00000484954 SFRP1Q8N474 314 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 CCDC71LQ8N9Z2 235 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 MLKLQ8NB16 471 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 LPCAT1Q8NF37 534 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 DCUN1D4Q92564 292 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 JAKMIP1Q96N16 626 aaKnown RBP1.87□□□□□ -2.11
VPS50-216ENST00000484954 DESI2Q9BSY9 194 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 NXF3Q9H4D5 531 aaKnown RBP1.87□□□□□ -2.11
VPS50-216ENST00000484954 ZWILCHQ9H900 591 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 NTN4Q9HB63 628 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 PNO1Q9NRX1 252 aaKnown RBP1.87□□□□□ -2.11
VPS50-216ENST00000484954 DCAF13Q9NV06 445 aaKnown RBP1.87□□□□□ -2.11
VPS50-216ENST00000484954 COPS7AQ9UBW8 275 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 ZMYM6O95789 1325 aa1.87□□□□□ -2.11
VPS50-216ENST00000484954 ANKRD30BQ9BXX2 1392 aa1.86□□□□□ -2.11
VPS50-216ENST00000484954 NPIPA2E9PIF3 369 aa1.86□□□□□ -2.11
VPS50-216ENST00000484954 K7ENP7 123 aa1.86□□□□□ -2.11
VPS50-216ENST00000484954 TLR4O00206 839 aa1.86□□□□□ -2.11
VPS50-216ENST00000484954 ABCD4O14678 606 aa1.86□□□□□ -2.11
VPS50-216ENST00000484954 IMPA2O14732 288 aa1.86□□□□□ -2.11
VPS50-216ENST00000484954 ARPC1BO15143 372 aaKnown RBP1.86□□□□□ -2.11
VPS50-216ENST00000484954 LYPLA1O75608 230 aaPredicted RBP1.86□□□□□ -2.11
VPS50-216ENST00000484954 SCRG1O75711 98 aa1.86□□□□□ -2.11
VPS50-216ENST00000484954 STK17BO94768 372 aa1.86□□□□□ -2.11
VPS50-216ENST00000484954 GSTA1P08263 222 aa1.86□□□□□ -2.11
VPS50-216ENST00000484954 IGFBP1P08833 259 aaPredicted RBP1.86□□□□□ -2.11
VPS50-216ENST00000484954 MARCKSP29966 332 aaPredicted RBP1.86□□□□□ -2.11
VPS50-216ENST00000484954 RPS10P46783 165 aaKnown RBP1.86□□□□□ -2.11
VPS50-216ENST00000484954 NOP14P78316 857 aaKnown RBP1.86□□□□□ -2.11
VPS50-216ENST00000484954 OTUD4Q01804 1114 aaKnown RBP1.86□□□□□ -2.11
VPS50-216ENST00000484954 ROR1Q01973 937 aa1.86□□□□□ -2.11
VPS50-216ENST00000484954 C17orf67Q0P5P2 114 aa1.86□□□□□ -2.11
VPS50-216ENST00000484954 DPYSL3Q14195 570 aa1.86□□□□□ -2.11
VPS50-216ENST00000484954 LIPKQ5VXJ0 399 aa1.86□□□□□ -2.11
VPS50-216ENST00000484954 ZNF589Q86UQ0 364 aaPredicted RBP1.86□□□□□ -2.11
VPS50-216ENST00000484954 RDH5Q92781 318 aa1.86□□□□□ -2.11
VPS50-216ENST00000484954 CTRCQ99895 268 aa1.86□□□□□ -2.11
VPS50-216ENST00000484954 TRMT6Q9UJA5 497 aaKnown RBP1.86□□□□□ -2.11
VPS50-216ENST00000484954 DHRS7Q9Y394 339 aa1.86□□□□□ -2.11
VPS50-216ENST00000484954 WSB1Q9Y6I7 421 aa1.86□□□□□ -2.11
VPS50-216ENST00000484954 RAD54L2Q9Y4B4 1467 aa1.86□□□□□ -2.11
VPS50-216ENST00000484954 TUBAL3A6NHL2 446 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 E9PLD3 99 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 SNAI2O43623 268 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 FOXH1O75593 365 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 SUPT7LO94864 414 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 CXCL14O95715 111 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 APRTP07741 180 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 AREGP15514 252 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 ZNF44P15621 663 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 TNNT3P45378 269 aaPredicted RBP1.85□□□□□ -2.11
VPS50-216ENST00000484954 STARP49675 285 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 CNN1P51911 297 aaKnown RBP1.85□□□□□ -2.11
VPS50-216ENST00000484954 CCZ1BP86790 482 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 CCZ1P86791 482 aaPredicted RBP1.85□□□□□ -2.11
VPS50-216ENST00000484954 KCNJ11Q14654 390 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 GPNMBQ14956 572 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 CYP51A1Q16850 503 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 TMEM52BQ4KMG9 183 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 CYB5R2Q6BCY4 276 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 SULT1C3Q6IMI6 304 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 CCDC36Q8IYA8 594 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 PEX5LQ8IYB4 626 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 ARIH2OSQ8N7S6 290 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 KIR2DL5BQ8NHK3 375 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 ST7LQ8TDW4 575 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 C7orf33Q8WU49 177 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 NEIL2Q969S2 332 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 CCDC51Q96ER9 411 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 C5orf30Q96GV9 206 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 SLC35E1Q96K37 410 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 TSPAN18Q96SJ8 248 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 FAM213AQ9BRX8 229 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 CARD6Q9BX69 1037 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 SLC5A7Q9GZV3 580 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 TRPV6Q9H1D0 765 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 IL1RAPL2Q9NP60 686 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 MARCH5Q9NX47 278 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 EHFQ9NZC4 300 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 LCMT1Q9UIC8 334 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 FZR1Q9UM11 496 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 FKBP7Q9Y680 259 aa1.85□□□□□ -2.11
VPS50-216ENST00000484954 MTCL1Q9Y4B5 1905 aaKnown RBP1.85□□□□□ -2.11
VPS50-216ENST00000484954 A0A1B0GUA9 196 aa1.84□□□□□ -2.11
VPS50-216ENST00000484954 TMEM89A2RUT3 159 aa1.84□□□□□ -2.11
VPS50-216ENST00000484954 DHRS7CA6NNS2 312 aa1.84□□□□□ -2.11
VPS50-216ENST00000484954 WISP3O95389 354 aaPredicted RBP1.84□□□□□ -2.11
VPS50-216ENST00000484954 JCHAINP01591 159 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms