RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 RAD9BQ6WBX8 426 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 PEX26Q7Z412 305 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 IFNEQ86WN2 208 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 PALM2Q8IXS6 379 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 TAGAPQ8N103 731 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 CCDC89Q8N998 374 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 NUP43Q8NFH3 380 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 ZNF473Q8WTR7 871 aaKnown RBP4.7□□□□□ -1.66
PTPN4-209ENST00000469511 ANKRD49Q8WVL7 239 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 RIT1Q92963 219 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 S100PBPQ96BU1 408 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 C11orf24Q96F05 449 aaPredicted RBP4.7□□□□□ -1.66
PTPN4-209ENST00000469511 SIGLEC10Q96LC7 697 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 HS6ST2Q96MM7 605 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 SFXN2Q96NB2 322 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 NPAS1Q99742 590 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 SLC39A3Q9BRY0 314 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 TMEM79Q9BSE2 394 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 OSBPL11Q9BXB4 747 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 RTN4RQ9BZR6 473 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 TRIM2Q9C040 744 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 OR51B5Q9H339 312 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 C12orf65Q9H3J6 166 aaKnown RBP4.7□□□□□ -1.66
PTPN4-209ENST00000469511 RPF2Q9H7B2 306 aaKnown RBP4.7□□□□□ -1.66
PTPN4-209ENST00000469511 NT5DC2Q9H857 520 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 COPS7BQ9H9Q2 264 aaPredicted RBP4.7□□□□□ -1.66
PTPN4-209ENST00000469511 RNF122Q9H9V4 155 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 FOLH1BQ9HBA9 442 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 PLAC1Q9HBJ0 212 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 PLSCR4Q9NRQ2 329 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 SNX15Q9NRS6 342 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 FBLN5Q9UBX5 448 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 ZNF337Q9Y3M9 751 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 RNF115Q9Y4L5 304 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 KCNE2Q9Y6J6 123 aa4.7□□□□□ -1.66
PTPN4-209ENST00000469511 WNK1Q9H4A3 2382 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 CMYA5Q8N3K9 4069 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 NCF1BA6NI72 391 aaPredicted RBP4.69□□□□□ -1.66
PTPN4-209ENST00000469511 NCF1CA8MVU1 366 aaPredicted RBP4.69□□□□□ -1.66
PTPN4-209ENST00000469511 SHISA9B4DS77 424 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 AKR1B15C9JRZ8 316 aaPredicted RBP4.69□□□□□ -1.66
PTPN4-209ENST00000469511 TMPRSS11DO60235 418 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 TMCC2O75069 709 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 H2AFYO75367 372 aaKnown RBP4.69□□□□□ -1.66
PTPN4-209ENST00000469511 ZNF189O75820 626 aaPredicted RBP4.69□□□□□ -1.66
PTPN4-209ENST00000469511 CBR3O75828 277 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 CLDN9O95484 217 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 GPR75O95800 540 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 GBAP04062 536 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 COL6A2P12110 1019 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 COX7A2P14406 83 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 NCF1P14598 390 aaPredicted RBP4.69□□□□□ -1.66
PTPN4-209ENST00000469511 GNAZP19086 355 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 TPSB2P20231 275 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 GPX3P22352 226 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 SRD5A2P31213 254 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 GAS1P54826 345 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 AP1S2P56377 157 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 IL2P60568 153 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 RPS13P62277 151 aaKnown RBP4.69□□□□□ -1.66
PTPN4-209ENST00000469511 IRF9Q00978 393 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 PLIN5Q00G26 463 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 HMGCS1Q01581 520 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 TNFRSF17Q02223 184 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 DUSP2Q05923 314 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 BSPH1Q075Z2 132 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 MGAT2Q10469 447 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 TPSAB1Q15661 275 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 TAB1Q15750 504 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 CR1LQ2VPA4 569 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 TMEM177Q53S58 311 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 LIPNQ5VXI9 398 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 C11orf71Q6IPW1 123 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 MFSD12Q6NUT3 480 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 FAM180BQ6P0A1 224 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 GPSM1Q86YR5 675 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 IGDCC3Q8IVU1 814 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 DND1Q8IYX4 353 aaKnown RBP4.69□□□□□ -1.66
PTPN4-209ENST00000469511 ST13P4Q8IZP2 240 aaPredicted RBP4.69□□□□□ -1.66
PTPN4-209ENST00000469511 SPATA6LQ8N4H0 392 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 C10orf105Q8TEF2 133 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 CAVIN3Q969G5 261 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 C3orf49Q96BT1 292 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 RHBDF1Q96CC6 855 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 REPS1Q96D71 796 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 OMA1Q96E52 524 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 HES6Q96HZ4 224 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 SERPINB12Q96P63 405 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 HBEGFQ99075 208 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 NAP1L3Q99457 506 aaPredicted RBP4.69□□□□□ -1.66
PTPN4-209ENST00000469511 EGFL8Q99944 293 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 TBCDQ9BTW9 1192 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 JAM3Q9BX67 310 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 CACNG6Q9BXT2 260 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 ZNF717Q9BY31 904 aaPredicted RBP4.69□□□□□ -1.66
PTPN4-209ENST00000469511 ITPAQ9BY32 194 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 OR10A5Q9H207 317 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 ACTR8Q9H981 624 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 ANKRA2Q9H9E1 313 aa4.69□□□□□ -1.66
PTPN4-209ENST00000469511 CXorf21Q9HAI6 301 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms