RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 CCDC110Q8TBZ0 833 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 BRSK1Q8TDC3 778 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 CCDC12Q8WUD4 166 aaPredicted RBP2.7□□□□□ -1.98
LINC01040-201ENST00000425048 ANKRD49Q8WVL7 239 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 STARD8Q92502 1023 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 RAD54LQ92698 747 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 PRCCQ92733 491 aaPredicted RBP2.7□□□□□ -1.98
LINC01040-201ENST00000425048 ERP27Q96DN0 273 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 EPSTI1Q96J88 318 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 PSKH2Q96QS6 385 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 TESK2Q96S53 571 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 PRMT1Q99873 361 aaKnown RBP2.7□□□□□ -1.98
LINC01040-201ENST00000425048 SPATA16Q9BXB7 569 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 CCSER1Q9C0I3 900 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 NMUR2Q9GZQ4 415 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 GLT8D2Q9H1C3 349 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 ALDH8A1Q9H2A2 487 aaPredicted RBP2.7□□□□□ -1.98
LINC01040-201ENST00000425048 HSD3B7Q9H2F3 369 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 IL20Q9NYY1 176 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 NDUFA13Q9P0J0 144 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 IFNKQ9P0W0 207 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 ATP6V1DQ9Y5K8 247 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 NAV1Q8NEY1 1877 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 USP32Q8NFA0 1604 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 SBNO1A3KN83 1393 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 SPHKAPQ2M3C7 1700 aa2.7□□□□□ -1.98
LINC01040-201ENST00000425048 ARHGEF28Q8N1W1 1705 aaKnown RBP2.7□□□□□ -1.98
LINC01040-201ENST00000425048 CDK12Q9NYV4 1490 aaPredicted RBP2.7□□□□□ -1.98
LINC01040-201ENST00000425048 GAKO14976 1311 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 AFF2P51816 1311 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 MROH7Q68CQ1 1323 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 CD109Q6YHK3 1445 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 MYO5AQ9Y4I1 1855 aaKnown RBP2.69□□□□□ -1.98
LINC01040-201ENST00000425048 ITSN1Q15811 1721 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 GMNCA6NCL1 334 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 SLC15A5A6NIM6 579 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 B4DXG7 233 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 E9PBE3 544 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 IFIT3O14879 490 aaKnown RBP2.69□□□□□ -1.98
LINC01040-201ENST00000425048 RNF113AO15541 343 aaKnown RBP2.69□□□□□ -1.98
LINC01040-201ENST00000425048 TRAPPC3O43617 180 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 PEX11AO75192 247 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 GRAP2O75791 330 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 LCA5LO95447 670 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 SNRPCP09234 159 aaKnown RBP2.69□□□□□ -1.98
LINC01040-201ENST00000425048 POLR2EP19388 210 aaKnown RBP2.69□□□□□ -1.98
LINC01040-201ENST00000425048 PRKACBP22694 351 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 CPT2P23786 658 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 TMOD1P28289 359 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 ARHGDIAP52565 204 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 EFNA3P52797 238 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 AP3M2P53677 418 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 SH3BGRP55822 239 aaPredicted RBP2.69□□□□□ -1.98
LINC01040-201ENST00000425048 KCNJ2P63252 427 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 BASP1P80723 227 aaKnown RBP2.69□□□□□ -1.98
LINC01040-201ENST00000425048 AKAP17AQ02040 695 aaKnown RBP2.69□□□□□ -1.98
LINC01040-201ENST00000425048 GBE1Q04446 702 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 ZNF33BQ06732 778 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 ITGB3BPQ13352 177 aaPredicted RBP2.69□□□□□ -1.98
LINC01040-201ENST00000425048 KARSQ15046 597 aaKnown RBP2.69□□□□□ -1.98
LINC01040-201ENST00000425048 QRICH1Q2TAL8 776 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 IQCCQ4KMZ1 466 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 C6orf136Q5SQH8 315 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 CFAP58Q5T655 872 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 TWF2Q6IBS0 349 aaKnown RBP2.69□□□□□ -1.98
LINC01040-201ENST00000425048 ZNF770Q6IQ21 691 aaPredicted RBP2.69□□□□□ -1.98
LINC01040-201ENST00000425048 ALKBH5Q6P6C2 394 aaKnown RBP2.69□□□□□ -1.98
LINC01040-201ENST00000425048 NLRP9Q7RTR0 991 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 PCGF5Q86SE9 256 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 PHLDB2Q86SQ0 1253 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 TGIF2LYQ8IUE0 185 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 VSTM4Q8IW00 320 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 ITPRIPQ8IWB1 547 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 CCDC83Q8IWF9 413 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 SLC38A6Q8IZM9 456 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 IQCKQ8N0W5 287 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 SLC35F6Q8N357 371 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 BBS5Q8N3I7 341 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 LSMEM1Q8N8F7 131 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 OR1K1Q8NGR3 316 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 FNDC8Q8TC99 324 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 NAT14Q8WUY8 206 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 DYDC1Q8WWB3 177 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 SRSF12Q8WXF0 261 aaKnown RBP2.69□□□□□ -1.98
LINC01040-201ENST00000425048 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP2.69□□□□□ -1.98
LINC01040-201ENST00000425048 CCDC127Q96BQ5 260 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 HAUS1Q96CS2 278 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 C16orf58Q96GQ5 468 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 SNF8Q96H20 258 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 SPATA17Q96L03 361 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 PANX2Q96RD6 677 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 TBX15Q96SF7 602 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 FAM129AQ9BZQ8 928 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 VCXQ9H320 206 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 C12orf10Q9HB07 376 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 EURLQ9NYK6 297 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 SEPT10Q9P0V9 454 aa2.69□□□□□ -1.98
LINC01040-201ENST00000425048 XPO7Q9UIA9 1087 aaKnown RBP2.69□□□□□ -1.98
LINC01040-201ENST00000425048 MAP2P11137 1827 aaKnown RBP2.69□□□□□ -1.98
LINC01040-201ENST00000425048 ECM29Q5VYK3 1845 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms